Hg_chrom7_TN10mRNA_14356
Organism: Heterodera glycines Gene Locus: chr7:6428844-6430612 Feature type: polypeptideProtein Sequence
Length: 251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.112 | 0.927 | 0.942 | 0.55 | 1.262 | 0.613 | 0.996 | 2.39 | 0.708 | 0.538 | 1.388 | 1.172 | 1.881 | 0.919 | 1.707 | 0.911 | 0.718 | 0.785 | 0.306 | 0.586 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13549
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.777
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRVAQAYEVLSDEKRRTD,RRLALKWHPDKNPERKEKA,RLALKWHPDKNPERKEKAEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.680
|
0.428
|
0.010
|
0.626
|
0.309
|
0.128
|
0.086
|
0.102
|
0.243
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011462
|
1.000
|
1.000
|
Hsc_gene_12609.t1
|
Hsc_gene_12609.t1
|
— |
Q0III6.1 DnaJ homolog subfamily B member 6 [Bos taurus]
|
KAI1721280.1 dnaJ domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030544|GO:0051082|GO:0061077
|
GO:0005575_0.826|GO:0110165_0.823|GO:0005622_0.792|GO:0016020_0.696|GO:0008150_0.669|GO:0043226_0.669|GO:0043229_0.663|GO:0005737_0.652|GO:0043227_0.618|GO:0043231_0.615|GO:0003674_0.610|GO:0009987_0.557|GO:0005488_0.548
|
IPR001623+15-74_16-71_16-82_17-79_18-36_36-51_54-74+|IPR018253+59-78+|IPR036869+15-133_15-139+|IPR043183+18-246+
|
SM00271+15-74+
|
PF00226+17-79+DnaJ_domain
|
— |
PTHR45168+18-246+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-251
|
2dmx_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
28223.810
|
10.163
|
18.000
|
35.060
|
13.944
|
52.191
|
47.809
|
22.311
|
12.749
|
49.402
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2834.019
|
2868.563
|
3377.438
|
3077.641
|
2381.409
|
5363.469
|
2406.621
|
6027.500
|
295.366
|
2613.820
|
1620.197
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.402
|
1.186
|
-1.146
|
— |
-1.183
|
-3.255
|
3.567
|
— | — | — |
No JSON data available for plots.