Hg_chrom7_TN10mRNA_14357
Organism: Heterodera glycines Gene Locus: chr7:6431692-6433825 Feature type: polypeptideProtein Sequence
Length: 424
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 0.548 | 0.515 | 0.407 | 0.747 | 0.786 | 0.898 | 1.533 | 1.153 | 1.912 | 0.643 | 1.942 | 2.358 | 1.089 | 1.203 | 0.977 | 0.696 | 0.929 | 1.814 | 0.763 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13550
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.516
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RNRLKGK
|
40-63
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.240
|
0.193
|
0.011
|
0.183
|
0.884
|
0.184
|
0.372
|
0.058
|
0.156
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011463
|
1.000
|
1.000
|
Hsc_gene_12608.t1
|
Hsc_gene_12608.t1
|
— |
Q9XWU8.2 Ectopic P granules protein 3 [Caenorhabditis elegans]
|
KAH7731508.1 Protein EPG-3 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0009987_0.916|GO:0005575_0.844|GO:0110165_0.835|GO:0005622_0.721|GO:0005737_0.710|GO:0016020_0.658|GO:0008152_0.657|GO:0051179_0.643|GO:0006810_0.641|GO:0051234_0.641|GO:0044237_0.637|GO:0009056_0.589|GO:0044248_0.583|GO:0006914_0.574|GO:0061919_0.574|GO:0005886_0.565|GO:0071944_0.565|GO:0043226_0.525|GO:0043229_0.512|GO:0043227_0.511|GO:0005773_0.501|GO:0043231_0.501
|
IPR050577+91-414+
|
— | — | — |
PTHR10281+91-414+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-424
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
48238.750
|
9.888
|
18.500
|
20.519
|
16.509
|
37.028
|
62.972
|
13.208
|
7.311
|
43.160
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1625.919
|
1078.797
|
985.884
|
1150.074
|
1468.780
|
1386.620
|
1461.823
|
2157.368
|
1632.286
|
2255.677
|
1988.509
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.360
|
— |
0.332
|
0.321
|
— | — |
0.528
|
-0.416
|
— | — | — | — | — |
No JSON data available for plots.