Hg_chrom7_TN10mRNA_14359
Organism: Heterodera glycines Gene Locus: chr7:6437796-6439128 Feature type: polypeptideProtein Sequence
Length: 261
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.535 | 0.535 | 0.766 | 0.793 | 1.213 | 0.884 | 0.958 | 1.341 | 1.277 | 1.346 | 0.058 | 1.803 | 3.086 | 1.032 | 1.251 | 0.547 | 0.754 | 1.277 | 2.063 | 1.127 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13552
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.071
|
0.090
|
0.013
|
0.103
|
0.838
|
0.311
|
0.680
|
0.004
|
0.160
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011465
|
1.000
|
1.000
|
Hsc_gene_12606.t1
|
Hsc_gene_12606.t1
|
— |
Q21997.2 Derlin-2 [Caenorhabditis elegans]
|
KAI1729273.1 der1-like family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.902|GO:0005886_0.902|GO:0016020_0.902|GO:0071944_0.902|GO:0110165_0.902|GO:0008150_0.829|GO:0009987_0.794|GO:0005622_0.701|GO:0005737_0.701|GO:0005773_0.701|GO:0043226_0.701|GO:0043227_0.701|GO:0043229_0.701|GO:0043231_0.701|GO:0006810_0.685|GO:0051179_0.685|GO:0051234_0.685|GO:0050896_0.681|GO:0012505_0.669|GO:0051716_0.629|GO:0005783_0.599|GO:0006950_0.592|GO:0033554_0.521|GO:0008152_0.520|GO:0003674_0.517|GO:0019538_0.509|GO:0043170_0.509|GO:0044238_0.509|GO:0071705_0.507
|
IPR007599+11-200+|IPR035952+10-189+
|
— |
PF04511+11-200+Der1-like_family
|
— |
PTHR11009+6-230+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
221-261
|
1.000
|
1-220
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.741
|
30349.060
|
4.634
|
-9.500
|
20.690
|
20.307
|
34.866
|
65.134
|
9.195
|
11.494
|
43.678
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
660.476
|
664.256
|
744.315
|
688.343
|
747.410
|
762.178
|
1142.289
|
822.308
|
1023.140
|
33.068
|
457.384
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.594
|
— |
0.616
|
5.079
|
— | — | — | — |
No JSON data available for plots.