SCN Proteipedia

Hg_chrom7_TN10mRNA_14362

Organism: Heterodera glycines Gene Locus: chr7:6446743-6449475 Feature type: polypeptide

Protein Sequence

Length: 573

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.568	0.731	1.872	3.731	1.222	0.626	0.748	1.396	0.737	0.873	0.846	1.232	0.873	0.94	1.175	1.222	0.801	0.74	0.537	0.513	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13555	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRKL	25-79	0.859	—	—	—	—	0.000	—	—	0.213	0.050	0.009	0.232	0.239	0.488	0.559	0.009	0.734	0.277

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011467	1.000	1.000	Hsc_gene_12602.t1	Hsc_gene_12602.t1	—	Q21629.1 LDL receptor repeat-containing protein egg-2 [Caenorhabditis elegans]	KAH7728914.1 low-density lipoprotein receptor domain class A containing protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.971\|GO:0005575_0.718\|GO:0110165_0.718\|GO:0009987_0.686\|GO:0065007_0.683\|GO:0050789_0.668\|GO:0050794_0.627\|GO:0071944_0.600\|GO:0016020_0.592\|GO:0032502_0.584\|GO:0048856_0.584\|GO:0005886_0.576\|GO:0048518_0.529\|GO:0048522_0.516	IPR002172+138-176_138-177_139-175_151-172_177-221_183-222_193-214_223-261_229-260_262-299_262-300_269-298_302-341_302-342_316-337_390-436_390-437_410-436_412-433_413-436_435-479_437-479_442-478_454-475_480-516_480-517_480-518_481-516_492-513+\|IPR023415+494-518+\|IPR036055+137-175_138-175_221-267_227-260_301-340_307-341_388-439_409-436_440-481_480-523_482-518+\|IPR050685+441-548+	SM00192+138-177_183-222_223-261_262-300_302-342_390-436_437-479_480-518+	PF00057+139-175_410-436_480-516+Low-density_lipoprotein_receptor_domain_class_A	—	PTHR24270+441-548+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-573	9cwm_B	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.715	63497.270	4.594	-28.000	31.763	8.377	50.785	49.215	14.136	17.627	58.639

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	867.328	248.147	523.342	357.369	514.959	1150.321	5669.950	333.216	133.942	395.115	283.184

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.844	0.389	-0.439	0.494	1.174	2.314	-1.901	4.236	—	—	—	—	—

No JSON data available for plots.

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