SCN Proteipedia

Hg_chrom7_TN10mRNA_14367

Organism: Heterodera glycines Gene Locus: chr7:6466344-6474966 Feature type: polypeptide

Protein Sequence

Length: 1,948

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.913	0.991	0.915	0.566	1.369	1.25	0.532	0.898	1.141	1.269	0.754	1.208	1.112	1.214	1.582	1.115	0.985	0.84	0.908	0.498	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13560	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRK,RRRK,RRRR,PLSKRQR,RAEKRKG,KAKKEWARKLAVRA,RRGPIPAVPLSRRSRP,RRIGIWLSAEEKLRRRPL,RKHAAHLANCALFRRRVA,RKTAAESPLRTVVTKQRRR	—	—	—	—	—	—	0.000	—	—	0.935	0.058	0.050	0.157	0.022	0.024	0.021	0.010	0.058	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004611	1.000	2.000	Hsc_gene_12597.t1;Hsc_gene_12597.t2	Hsc_gene_12597.t1;Hsc_gene_12597.t2;Hsc_gene_12597.t3	—	Q9NEL2.4 Helicase ssl-1 [Caenorhabditis elegans]	KAI3413563.1 HSA [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0140658	GO:0008150_0.913\|GO:0009987_0.794\|GO:0005575_0.790\|GO:0110165_0.784\|GO:0005622_0.725\|GO:0065007_0.716\|GO:0016020_0.700\|GO:0050789_0.697\|GO:0043226_0.663\|GO:0050794_0.652\|GO:0043229_0.640\|GO:0043227_0.583\|GO:0043231_0.556\|GO:0003674_0.545\|GO:0071840_0.516\|GO:0016043_0.510	IPR000330+441-726+\|IPR001005+1732-1797+\|IPR001650+1060-1172_1063-1213_1089-1172+\|IPR014001+434-626_450-615+\|IPR014012+134-206_135-207_138-207+\|IPR027417+411-660_662-1230_1024-1280+\|IPR038718+408-683+\|IPR049730+1054-1183+\|IPR050520+92-374+	SM00487+434-626+\|SM00490+1089-1172+\|SM00573+135-207+	PF00176+441-726+SNF2-related_domain\|PF00271+1060-1172+Helicase_conserved_C-terminal_domain\|PF07529+138-207+HSA_domain	G3DSA:3.40.50.10810:FF:000005+408-683+Photoperiod-independent_early_flowering_1\|G3DSA:3.40.50.300:FF:001674+1016-1271+E1A-binding_protein_p400_isoform_X7	PTHR45685+92-374+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	261-395;1243-1291;1448-1647;1875-1948	4.000	1-260;396-1242;1292-1447;1648-1874	9cab_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.684	219690.520	6.864	7.500	27.772	8.676	50.719	49.281	14.528	13.244	48.922

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2294.653	6829.793	2608.798	2259.182	2282.328	2085.363	2509.949	1828.014	2222.056	721.279	1364.469

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.618	-1.733	-0.099	—	—	0.278	—	0.599	—	—	—	—	—

No JSON data available for plots.

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