Hg_chrom7_TN10mRNA_14373
Organism: Heterodera glycines Gene Locus: chr7:6495337-6496530 Feature type: polypeptideProtein Sequence
Length: 233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.599 | 1.697 | 1.092 | 0.592 | 1.073 | 0.99 | 0.307 | 1.288 | 1.717 | 1.566 | 1.105 | 2.02 | 0.835 | 0.248 | 1.314 | 1.533 | 1.055 | 0.585 | 0.0 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13566
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.896
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole
|
— |
KKYPAINHLMNKIRMKKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.115
|
0.121
|
0.016
|
0.187
|
0.643
|
0.649
|
0.636
|
0.068
|
0.233
|
0.006
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011476
|
1.000
|
1.000
|
Hsc_gene_12590.t1
|
Hsc_gene_12590.t1
|
— |
A8XLW0.1 Golgi SNAP receptor complex member 1 [Caenorhabditis briggsae]
|
KAI1729271.1 golgi SNAP receptor complex member 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000139|GO:0005484|GO:0005794|GO:0005801|GO:0006888|GO:0016020|GO:0016192
|
GO:0005575_0.950|GO:0110165_0.948|GO:0016020_0.916|GO:0005622_0.798|GO:0043226_0.781|GO:0005886_0.761|GO:0071944_0.761|GO:0043229_0.758|GO:0043227_0.735|GO:0043231_0.731|GO:0005737_0.711|GO:0008150_0.702|GO:0009987_0.665|GO:0005773_0.658|GO:0012505_0.634|GO:0051179_0.567|GO:0051234_0.556|GO:0006810_0.554|GO:0005794_0.503
|
IPR023601+4-232+|IPR027027+3-233+
|
— |
PF12352+144-208+Snare_region_anchored_in_the_vesicle_membrane_C-terminus
|
— |
PTHR21094+4-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-233
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
26639.440
|
8.474
|
6.000
|
28.755
|
8.155
|
57.082
|
42.918
|
16.309
|
12.446
|
45.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
1854.225
|
1393.520
|
1239.731
|
975.315
|
1200.068
|
1532.574
|
1722.452
|
2361.502
|
2989.076
|
1960.993
|
2401.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.398
|
-0.652
|
-0.238
|
0.267
|
0.368
|
0.178
|
0.518
|
-0.312
|
— |
-1.464
|
— | — | — |
No JSON data available for plots.