Hg_chrom7_TN10mRNA_14375
Organism: Heterodera glycines Gene Locus: chr7:6502592-6507934 Feature type: polypeptideProtein Sequence
Length: 989
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.152 | 0.941 | 1.14 | 0.07 | 1.601 | 1.452 | 0.698 | 0.607 | 0.652 | 0.915 | 0.751 | 0.714 | 0.927 | 1.439 | 1.321 | 1.387 | 1.227 | 0.827 | 0.156 | 0.357 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13568
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.434
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
LGEV,PEGTKRHKKRRRK
|
— | — |
50-74
|
0.983
|
1-22
|
0.996
|
1.000
|
0.000
|
0.000
|
0.281
|
0.094
|
0.010
|
0.377
|
0.089
|
0.023
|
0.094
|
0.034
|
0.208
|
0.874
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011478
|
1.000
|
1.000
|
Hsc_gene_12588.t1
|
— | — | — |
KAI3413580.1 Secreted protein acidic and rich in cysteine Ca binding region, variant 2 [Globodera pallida]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.955|GO:0110165_0.954|GO:0016020_0.880|GO:0005622_0.877|GO:0043226_0.847|GO:0043229_0.802|GO:0043227_0.752|GO:0005737_0.739|GO:0043231_0.723|GO:0005634_0.683|GO:0005829_0.605|GO:0005773_0.600|GO:0000325_0.540
|
IPR002048+218-245_220-255_224-252_329-357_364-392_399-427_504-532_535-570_539-567_574-602+|IPR011992+196-349_330-458_476-601+|IPR018247+233-245_548-560_583-595+
|
SM00054+224-252_329-357_364-392_399-427_504-532_539-567_574-602+
|
PF13833+218-245+EF-hand_domain_pair
|
— |
PTHR10827+437-561+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
132-199;571-989
|
2.000
|
1-131;200-570
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
107568.250
|
4.618
|
-38.000
|
28.514
|
5.966
|
55.410
|
44.590
|
12.639
|
15.875
|
56.421
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1251.992
|
631.621
|
1545.296
|
454.682
|
1019.492
|
3508.561
|
499.072
|
1143.547
|
520.752
|
1786.051
|
1243.780
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.062
|
-0.611
|
-1.657
|
1.133
|
1.799
|
-2.803
|
-1.728
|
-1.050
|
— | — | — | — | — |