Hg_chrom7_TN10mRNA_14376
Organism: Heterodera glycines Gene Locus: chr7:6511908-6513835 Feature type: polypeptideProtein Sequence
Length: 365
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.956 | 0.956 | 0.897 | 0.661 | 1.142 | 1.475 | 0.652 | 1.233 | 1.339 | 1.259 | 0.83 | 1.612 | 1.218 | 0.948 | 1.566 | 0.665 | 0.764 | 1.038 | 1.264 | 0.564 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13569
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.935
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
4-25
|
0.956
|
— | — | — | — |
0.000
|
— | — |
0.060
|
0.125
|
0.002
|
0.133
|
0.404
|
0.218
|
0.906
|
0.018
|
0.183
|
0.194
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011479
|
1.000
|
1.000
|
Hsc_gene_12587.t1
|
Hsc_gene_12587.t1
|
— |
O77081.1 Protein-tyrosine sulfotransferase A [Caenorhabditis elegans]
|
KAI3413581.1 Protein-tyrosine sulfotransferase 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006478|GO:0008476
|
GO:0008150_0.939|GO:0003674_0.862|GO:0003824_0.735|GO:0005575_0.731|GO:0110165_0.724|GO:0016740_0.687|GO:0140096_0.676|GO:0009987_0.656|GO:0016020_0.652|GO:0008146_0.650|GO:0008476_0.650|GO:0016782_0.650|GO:0005622_0.632|GO:0005886_0.604|GO:0071944_0.604|GO:0005737_0.598|GO:0043226_0.578|GO:0043229_0.568|GO:0008152_0.546|GO:0043227_0.533|GO:0043231_0.519
|
IPR026634+35-358+|IPR027417+54-352_62-323+
|
— |
PF13469+64-257+Sulfotransferase_family
|
G3DSA:3.40.50.300:FF:000290+51-353+Protein-tyrosine_sulfotransferase
|
PTHR12788+35-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
310-365
|
1.000
|
1-309
|
8w5z_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
41574.900
|
8.580
|
9.500
|
27.397
|
10.411
|
46.575
|
53.425
|
15.616
|
11.781
|
45.753
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
887.559
|
831.647
|
771.027
|
880.663
|
799.035
|
797.429
|
725.337
|
928.092
|
523.812
|
1340.251
|
990.349
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.339
|
— |
0.301
|
-0.172
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.