Hg_chrom7_TN10mRNA_14378
Organism: Heterodera glycines Gene Locus: chr7:6514938-6516926 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 1.773 | 1.013 | 0.708 | 1.222 | 0.902 | 0.14 | 1.76 | 1.694 | 1.268 | 0.666 | 0.863 | 0.978 | 0.959 | 1.676 | 1.173 | 0.817 | 0.844 | 0.677 | 1.121 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13571
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.687
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.363
|
0.373
|
0.009
|
0.465
|
0.065
|
0.160
|
0.256
|
0.039
|
0.522
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011481
|
1.000
|
1.000
|
Hsc_gene_12585.t1
|
Hsc_gene_12585.t1
|
— |
P34624.3 Cyclin-Y [Caenorhabditis elegans]
|
KAI3413583.1 Cyclin-Y [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000079|GO:0019901
|
GO:0005575_0.892|GO:0110165_0.753|GO:0016020_0.682|GO:0008150_0.612|GO:0071944_0.576|GO:0005886_0.566|GO:0009987_0.555
|
IPR006671+167-267+|IPR012399+2-341+|IPR013763+175-260+|IPR036915+170-267+
|
SM00385+175-260+
|
PF00134+167-267+Cyclin,_N-terminal_domain
|
G3DSA:1.10.472.10:FF:000123+143-320+Cyclin-Y-like_protein_2
|
PTHR14248+14-333+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-71
|
1.000
|
72-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
39677.980
|
7.267
|
5.000
|
29.032
|
11.730
|
53.372
|
46.628
|
16.129
|
12.903
|
46.334
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
556.574
|
839.607
|
565.112
|
721.659
|
775.587
|
802.569
|
1130.791
|
1017.557
|
216.867
|
77.531
|
137.247
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.801
|
-0.356
|
0.462
|
— | — |
0.504
|
— |
0.295
|
— | — |
3.697
|
— | — |
No JSON data available for plots.