Hg_chrom7_TN10mRNA_14381
Organism: Heterodera glycines Gene Locus: chr7:6521007-6523369 Feature type: polypeptideProtein Sequence
Length: 346
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.975 | 0.605 | 0.946 | 0.797 | 1.06 | 0.667 | 0.619 | 0.867 | 0.642 | 1.601 | 1.095 | 1.36 | 1.927 | 0.389 | 1.003 | 1.156 | 1.09 | 1.051 | 1.112 | 1.275 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13574
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.890
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
26-46
|
0.873
|
— | — | — | — |
0.001
|
— | — |
0.192
|
0.851
|
0.131
|
0.192
|
0.360
|
0.052
|
0.053
|
0.046
|
0.038
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011484
|
1.000
|
1.000
|
Hsc_gene_12582.t1
|
Hsc_gene_12582.t1
|
— | — |
KAI1729269.1 transmembrane family of transporters domain-containing protein [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.906|GO:0110165_0.906|GO:0016020_0.847|GO:0005622_0.797|GO:0005737_0.786|GO:0043226_0.775|GO:0043229_0.747|GO:0043227_0.733|GO:0043231_0.724|GO:0031090_0.623|GO:0031967_0.567|GO:0005739_0.561|GO:0005740_0.553|GO:0031966_0.553|GO:0019866_0.551|GO:0005743_0.549
|
IPR026620+22-336+
|
— | — | — |
PTHR21824+22-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-346
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
39260.200
|
7.849
|
5.000
|
25.434
|
14.451
|
45.376
|
54.624
|
13.873
|
11.561
|
47.399
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
755.897
|
770.002
|
878.879
|
919.147
|
1030.430
|
774.813
|
903.025
|
672.054
|
197.236
|
928.490
|
615.095
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.118
|
0.173
|
0.133
|
-0.396
|
0.232
|
-0.310
|
0.569
|
— | — | — | — | — |
No JSON data available for plots.