Hg_chrom7_TN10mRNA_14384
Organism: Heterodera glycines Gene Locus: chr7:6527546-6530659 Feature type: polypeptideProtein Sequence
Length: 734
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 0.887 | 0.718 | 0.423 | 1.408 | 1.153 | 0.633 | 1.431 | 0.636 | 1.289 | 0.557 | 1.443 | 0.681 | 1.231 | 2.057 | 1.615 | 0.96 | 0.784 | 0.629 | 0.24 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13577
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RLTKRRL,MRRHKNGKRR,RRAKGWPNTEQDELERRKS,KKLAMVQDERDGEGRATRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.251
|
0.171
|
0.033
|
0.717
|
0.133
|
0.258
|
0.240
|
0.096
|
0.461
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011487
|
1.000
|
1.000
|
Hsc_gene_12579.t1
|
Hsc_gene_12579.t1
|
— |
Q7KW14.1 Coiled-coil domain-containing protein CG32809 [Drosophila melanogaster]
|
KAI1721308.1 actin interacting protein 3 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.920|GO:0110165_0.919|GO:0008150_0.816|GO:0005622_0.775|GO:0043226_0.713|GO:0009987_0.633|GO:0065007_0.630|GO:0050789_0.624|GO:0050794_0.612|GO:0043229_0.593|GO:0032502_0.553|GO:0048856_0.553|GO:0032501_0.549|GO:0007275_0.521|GO:0048731_0.508
|
IPR051825+171-690+
|
— | — | — |
PTHR22741+171-690+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-223;334-506;589-734
|
2.000
|
224-333;507-588
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
81553.680
|
9.232
|
20.500
|
29.019
|
6.948
|
54.496
|
45.504
|
16.621
|
12.398
|
51.499
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
550.184
|
2191.560
|
488.482
|
609.948
|
553.249
|
480.317
|
401.310
|
394.930
|
264.873
|
288.477
|
278.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.395
|
-1.982
|
0.429
|
-0.172
|
-0.190
|
-0.248
|
— | — | — | — |
2.759
|
— | — |
No JSON data available for plots.