Hg_chrom7_TN10mRNA_14385
Organism: Heterodera glycines Gene Locus: chr7:6531892-6533046 Feature type: polypeptideProtein Sequence
Length: 261
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 0.891 | 0.488 | 0.925 | 0.702 | 1.081 | 0.821 | 2.107 | 0.937 | 2.071 | 0.406 | 1.127 | 2.767 | 0.81 | 0.86 | 1.04 | 0.377 | 1.103 | 2.063 | 0.789 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13578
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.807
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
KRKPLP,PRWKRKP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.030
|
0.037
|
0.007
|
0.130
|
0.540
|
0.670
|
0.636
|
0.001
|
0.502
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011488
|
1.000
|
1.000
|
Hsc_gene_12578.t1
|
Hsc_gene_12578.t1
|
— |
P34465.1 Putative transmembrane ascorbate-dependent reductase CYB561 homolog [Caenorhabditis elegans]
|
KAI1721309.1 eukaryotic cytochrome b561 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.896|GO:0110165_0.896|GO:0016020_0.856|GO:0008150_0.787|GO:0003674_0.782|GO:0005622_0.766|GO:0043226_0.735|GO:0043229_0.722|GO:0071944_0.703|GO:0005886_0.697|GO:0043227_0.662|GO:0005737_0.654|GO:0003824_0.646|GO:0005773_0.612|GO:0043231_0.612|GO:0016491_0.585|GO:0009987_0.503
|
IPR006593+26-238_60-195_60-199+|IPR043205+23-246+
|
SM00665+60-195+
|
PF03188+60-199+Eukaryotic_cytochrome_b561
|
G3DSA:1.20.120.1770:FF:000001+16-247+Cytochrome_b_reductase_1
|
PTHR10106+23-246+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-261
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
29787.790
|
7.463
|
5.500
|
18.008
|
19.540
|
35.632
|
64.368
|
11.111
|
6.897
|
43.678
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
363.192
|
283.344
|
540.529
|
355.915
|
261.432
|
304.873
|
367.110
|
609.981
|
97.409
|
494.712
|
324.440
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
0.192
|
-0.494
|
-0.478
|
0.237
|
0.280
|
0.899
|
-0.591
|
— | — | — | — | — |
No JSON data available for plots.