Hg_chrom7_TN10mRNA_14387
Organism: Heterodera glycines Gene Locus: chr7:6533531-6535764 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.041 | 1.086 | 0.849 | 0.134 | 1.751 | 0.798 | 0.695 | 0.778 | 1.038 | 1.157 | 1.651 | 2.06 | 1.189 | 0.449 | 1.509 | 0.5 | 0.957 | 1.179 | 0.0 | 0.458 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13580
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKIQAKKKRER
|
14-36
|
0.983
|
— | — | — | — |
0.000
|
— | — |
0.372
|
0.308
|
0.031
|
0.424
|
0.182
|
0.272
|
0.168
|
0.004
|
0.206
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011489
|
1.000
|
1.000
|
Hsc_gene_12577.t1
|
Hsc_gene_12577.t1
|
— |
P34462.1 V-type proton ATPase subunit D [Caenorhabditis elegans]
|
KAI3413589.1 V-type proton ATPase subunit F [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046961
|
GO:0008150_0.811|GO:0005575_0.802|GO:0110165_0.800|GO:0016020_0.721|GO:0005622_0.639|GO:0009987_0.624|GO:0043226_0.598|GO:0005737_0.580|GO:0043229_0.578|GO:0043227_0.528|GO:0043231_0.506|GO:0051179_0.504|GO:0006810_0.502|GO:0051234_0.502
|
IPR002699+5-229_8-218_10-217_19-213+
|
— |
PF01813+19-213+ATP_synthase_subunit_D
|
— |
PTHR11671+5-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
209-257
|
1.000
|
1-208
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
29143.650
|
10.036
|
10.000
|
35.019
|
7.393
|
52.140
|
47.860
|
19.844
|
15.175
|
43.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.