Hg_chrom7_TN10mRNA_14388
Organism: Heterodera glycines Gene Locus: chr7:6536631-6537637 Feature type: polypeptideProtein Sequence
Length: 95
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.49 | 0.734 | 0.0 | 1.089 | 1.053 | 1.08 | 0.627 | 1.579 | 1.871 | 2.134 | 0.638 | 0.619 | 2.047 | 0.607 | 1.289 | 1.053 | 1.035 | 0.797 | 1.619 | 0.929 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13581
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.636
|
0.139
|
0.022
|
0.614
|
0.245
|
0.109
|
0.250
|
0.458
|
0.040
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002867
|
2.000
|
1.000
|
Hsc_gene_14857.t1
|
Hsc_gene_12575.t1;Hsc_gene_14857.t1;Hsc_gene_2107.t1
|
— |
Q20937.3 CCR4-NOT transcription complex subunit let-711 [Caenorhabditis elegans]
|
KAI1717100.1 CCR4-Not complex component, not1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0017148|GO:0030015
|
GO:0008150_0.917|GO:0005575_0.814|GO:0110165_0.805|GO:0009987_0.714|GO:0065007_0.705|GO:0005622_0.698|GO:0050789_0.684|GO:0005737_0.681|GO:0032502_0.613|GO:0043226_0.552|GO:0043229_0.537|GO:0050794_0.523
|
IPR007196+3-74+|IPR040398+2-79+
|
— |
PF04054+3-74+CCR4-Not_complex_component,_Not1
|
— |
PTHR13162+2-79+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-95
|
4c0d_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
11017.020
|
9.245
|
5.500
|
20.000
|
15.789
|
41.053
|
58.947
|
13.684
|
6.316
|
37.895
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
yellowgreen
|
417.615
|
255.049
|
270.364
|
324.791
|
328.693
|
281.203
|
471.443
|
221.103
|
387.642
|
729.092
|
582.756
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.212
|
0.374
|
— | — |
0.757
|
-0.451
|
1.235
|
— | — | — | — | — |
No JSON data available for plots.