Hg_chrom7_TN10mRNA_14389
Organism: Heterodera glycines Gene Locus: chr7:6537841-6539974 Feature type: polypeptideProtein Sequence
Length: 473
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.541 | 0.934 | 1.23 | 0.583 | 1.092 | 0.813 | 1.107 | 0.74 | 1.597 | 1.229 | 1.249 | 1.99 | 1.292 | 0.976 | 0.647 | 0.755 | 0.97 | 0.993 | 1.464 | 0.56 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13582
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.438
|
0.258
|
0.074
|
0.710
|
0.210
|
0.169
|
0.144
|
0.079
|
0.152
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011490
|
1.000
|
1.000
|
Hsc_gene_12574.t1
|
Hsc_gene_12574.t1
|
— |
Q9D1A2.1 Cytosolic non-specific dipeptidase [Mus musculus]
|
KAI1729264.1 peptidase family m20/M25/M40 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.817|GO:0005575_0.763|GO:0110165_0.760|GO:0003674_0.759|GO:0008152_0.682|GO:0003824_0.677|GO:0005622_0.659|GO:0005737_0.639|GO:0016787_0.586|GO:0140096_0.513|GO:0044238_0.505|GO:0008233_0.502
|
IPR001261+131-170+|IPR002933+96-467+|IPR011650+209-364+|IPR051458+3-468+
|
— |
PF01546+96-467+Peptidase_family_M20/M25/M40|PF07687+209-364+Peptidase_dimerisation_domain
|
— |
PTHR43270+3-468+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-473
|
4ruh_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
52600.630
|
5.392
|
-5.500
|
26.216
|
9.937
|
44.609
|
55.391
|
12.896
|
13.319
|
49.260
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
4005.041
|
1427.192
|
1559.636
|
8341.389
|
9072.329
|
8621.926
|
7542.172
|
2789.588
|
341.876
|
2507.811
|
1579.553
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.410
|
2.528
|
— | — | — |
-1.738
|
1.579
|
-3.027
|
4.798
|
— | — | — |
No JSON data available for plots.