Hg_chrom7_TN10mRNA_14391
Organism: Heterodera glycines Gene Locus: chr7:6542592-6544788 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 1.124 | 1.119 | 0.531 | 1.136 | 0.958 | 0.471 | 1.429 | 1.123 | 1.515 | 1.099 | 1.293 | 1.893 | 0.634 | 0.987 | 1.036 | 0.576 | 0.866 | 1.522 | 0.646 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13584
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.900
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRKRKKQRTEWEKGGKRRV,RKRKKQRTEWEKGGKRRVE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.962
|
0.095
|
0.004
|
0.129
|
0.021
|
0.009
|
0.035
|
0.004
|
0.027
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011492
|
1.000
|
1.000
|
Hsc_gene_12572.t1
|
Hsc_gene_12572.t1
|
— |
Q9BVI4.1 Nucleolar complex protein 4 homolog [Homo sapiens]
|
KAI1727836.1 CBF/Mak21 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042254
|
GO:0005575_0.912|GO:0110165_0.912|GO:0005622_0.834|GO:0016020_0.833|GO:0043226_0.773|GO:0043229_0.773|GO:0043227_0.734|GO:0043231_0.727|GO:0008150_0.661|GO:0009987_0.606|GO:0043228_0.602|GO:0043232_0.602|GO:0005634_0.593|GO:0031974_0.573|GO:0043233_0.573|GO:0070013_0.571|GO:0031981_0.566|GO:0005654_0.554|GO:0005730_0.549
|
IPR005612+193-341+|IPR027193+137-355+
|
— |
PF03914+193-341+CBF/Mak21_family
|
— |
PTHR12455+137-355+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
380-455
|
1.000
|
1-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
52053.680
|
6.817
|
2.500
|
27.912
|
13.846
|
47.253
|
52.747
|
14.945
|
12.967
|
45.055
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
855.737
|
685.997
|
760.103
|
1056.779
|
1100.418
|
775.469
|
823.233
|
695.878
|
1220.574
|
616.714
|
875.511
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.487
|
0.585
|
— |
-0.490
|
— | — |
0.383
|
— | — | — | — | — |
No JSON data available for plots.