Hg_chrom7_TN10mRNA_14393
Organism: Heterodera glycines Gene Locus: chr7:6546182-6549162 Feature type: polypeptideProtein Sequence
Length: 566
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.986 | 0.698 | 0.707 | 1.036 | 1.472 | 1.314 | 0.484 | 1.325 | 0.785 | 1.695 | 0.75 | 0.624 | 1.865 | 0.544 | 1.875 | 1.161 | 0.55 | 0.803 | 1.631 | 0.364 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13586
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
40-61
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.623
|
0.176
|
0.054
|
0.471
|
0.095
|
0.115
|
0.127
|
0.099
|
0.033
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011493
|
1.000
|
1.000
|
Hsc_gene_12571.t1
|
Hsc_gene_12571.t1
|
— |
P41842.2 Tetratricopeptide repeat-containing protein trd-1 [Caenorhabditis elegans]
|
KAH7725142.1 transcription initiation factor TFIID subunit A family protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.921|GO:0110165_0.921|GO:0005622_0.870|GO:0016020_0.849|GO:0043226_0.809|GO:0005737_0.800|GO:0043229_0.799|GO:0043227_0.762|GO:0043231_0.741|GO:0005634_0.621|GO:0008150_0.578|GO:0009987_0.532
|
IPR011990+246-558_399-554+|IPR019734+424-457_458-491_459-491_492-525_493-525+|IPR044244+78-538+
|
SM00028+424-457_458-491_492-525+
|
PF13181+459-491_493-525+Tetratricopeptide_repeat
|
— |
PTHR16193+78-538+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
564-566
|
1.000
|
1-563
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
65414.970
|
8.356
|
15.500
|
29.505
|
12.721
|
49.117
|
50.883
|
16.784
|
12.721
|
42.049
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1462.569
|
1224.292
|
1054.737
|
1788.801
|
2027.060
|
1399.856
|
1468.168
|
1070.951
|
1191.862
|
1742.141
|
1506.307
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.446
|
0.410
|
0.872
|
0.148
|
-0.519
|
— |
-0.492
|
0.598
|
— | — | — | — | — |
No JSON data available for plots.