Hg_chrom7_TN10mRNA_14395
Organism: Heterodera glycines Gene Locus: chr7:6551298-6553620 Feature type: polypeptideProtein Sequence
Length: 468
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 0.994 | 0.233 | 1.032 | 0.748 | 1.041 | 0.636 | 0.641 | 1.472 | 1.79 | 0.421 | 2.388 | 2.493 | 0.904 | 0.698 | 1.129 | 0.806 | 1.133 | 0.493 | 1.006 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13588
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.034
|
0.112
|
0.012
|
0.145
|
0.316
|
0.624
|
0.314
|
0.005
|
0.589
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011495
|
1.000
|
1.000
|
Hsc_gene_12569.t1
|
Hsc_gene_12569.t1
|
— |
Q8BHK3.1 Proton-coupled amino acid transporter 2 [Mus musculus]
|
KAI1729261.1 transmembrane amino acid transporter protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.914|GO:0009987_0.847|GO:0005575_0.832|GO:0110165_0.829|GO:0006810_0.827|GO:0051179_0.827|GO:0051234_0.827|GO:0016020_0.784|GO:0003674_0.761|GO:0055085_0.750|GO:0005215_0.705|GO:0022857_0.705|GO:0005886_0.679|GO:0071944_0.679|GO:0006865_0.607|GO:0003333_0.597|GO:0043226_0.581|GO:0043227_0.579|GO:0015171_0.567|GO:0005622_0.550|GO:0005737_0.550|GO:0005773_0.540|GO:0043229_0.540|GO:0043231_0.540
|
IPR013057+61-458+
|
— |
PF01490+61-458+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR22950+63-457+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33
|
1.000
|
34-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.722
|
52216.750
|
7.654
|
5.000
|
13.248
|
14.316
|
34.402
|
65.598
|
7.479
|
5.769
|
47.009
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1028.172
|
801.091
|
951.210
|
967.782
|
1066.831
|
1203.889
|
1243.442
|
1257.678
|
551.049
|
1275.495
|
965.018
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.136
|
0.133
|
— |
0.189
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.