Hg_chrom7_TN10mRNA_14396
Organism: Heterodera glycines Gene Locus: chr7:6553922-6555775 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 0.598 | 0.702 | 0.554 | 0.857 | 0.824 | 1.187 | 0.643 | 1.286 | 0.739 | 1.072 | 2.27 | 2.054 | 0.989 | 1.116 | 0.781 | 1.16 | 1.169 | 0.989 | 1.04 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13589
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.162
|
0.912
|
0.041
|
0.113
|
0.144
|
0.120
|
0.239
|
0.047
|
0.154
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011496
|
1.000
|
1.000
|
Hsc_gene_12568.t1
|
Hsc_gene_12568.t1
|
— |
P34519.1 Putative tricarboxylate transport protein, mitochondrial [Caenorhabditis elegans]
|
KAH7731307.1 tricarboxylate transport protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.731|GO:0005575_0.729|GO:0110165_0.717|GO:0009987_0.661|GO:0016020_0.651|GO:0005622_0.632|GO:0003674_0.606|GO:0043226_0.595|GO:0043229_0.589|GO:0043227_0.577|GO:0005737_0.572|GO:0043231_0.572
|
IPR018108+25-113_27-114_121-213_124-210_220-305_227-308+|IPR023395+27-300_29-309+|IPR049563+26-310+
|
— |
PF00153+27-114_121-213_227-308+Mitochondrial_carrier_protein
|
G3DSA:1.50.40.10:FF:000007+28-309+Mitochondrial_tricarboxylate_transport_protein-like
|
PTHR45788+26-310+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
34628.110
|
9.755
|
13.000
|
22.830
|
13.505
|
41.158
|
58.842
|
13.826
|
9.003
|
50.482
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1779.435
|
642.189
|
654.723
|
1581.518
|
6587.165
|
3805.322
|
2632.331
|
902.178
|
565.298
|
1059.018
|
847.424
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.201
|
1.163
|
1.380
|
2.026
|
-0.777
|
-0.522
|
-2.182
|
1.687
|
— | — |
3.148
|
— | — |
No JSON data available for plots.