SCN Proteipedia

Hg_chrom7_TN10mRNA_14400

Organism: Heterodera glycines Gene Locus: chr7:6565524-6567264 Feature type: polypeptide

Protein Sequence

Length: 371

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.752	1.63	0.49	0.372	0.854	1.935	0.706	1.887	0.719	1.056	0.898	1.744	0.674	1.451	0.66	2.079	0.928	0.653	0.415	0.634	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13592	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.947

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRPLNAYMIWTRQERKRIL	—	—	—	—	—	—	0.000	—	—	0.911	0.105	0.009	0.333	0.067	0.022	0.033	0.006	0.041	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002427	2.000	2.000	Hsc_gene_12566.t1;Hsc_gene_12566.t2	Hsc_gene_12566.t1;Hsc_gene_12566.t2	—	Q9H6I2.1 Transcription factor SOX-17 [Homo sapiens]	KAI3413602.1 HMG (high mobility group) box SOX-14 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	—	GO:0008150_0.900\|GO:0009987_0.783\|GO:0003674_0.758\|GO:0005488_0.758\|GO:0032502_0.739\|GO:0048856_0.723\|GO:0032501_0.708\|GO:0050789_0.690\|GO:0065007_0.690\|GO:0005575_0.680\|GO:0050794_0.678\|GO:0110165_0.673\|GO:0007275_0.655\|GO:0003676_0.652\|GO:0097159_0.652\|GO:0005622_0.645\|GO:0043226_0.622\|GO:0043229_0.617\|GO:0003677_0.604\|GO:0008152_0.582\|GO:0019222_0.582\|GO:0031323_0.582\|GO:0044237_0.582\|GO:0043565_0.578\|GO:0044238_0.571\|GO:0080090_0.571\|GO:0043170_0.567\|GO:0060255_0.567\|GO:0048731_0.560\|GO:0016020_0.555\|GO:0009058_0.554\|GO:0009059_0.554\|GO:0010467_0.554\|GO:0044249_0.554\|GO:0009889_0.550\|GO:0010556_0.550\|GO:0031326_0.550\|GO:0010468_0.545\|GO:0006139_0.540\|GO:0016070_0.540\|GO:0032774_0.540\|GO:0034654_0.540\|GO:0090304_0.540\|GO:0141187_0.540\|GO:0019219_0.538\|GO:0051252_0.538\|GO:0006351_0.526\|GO:0006355_0.518\|GO:2001141_0.518\|GO:0043227_0.512	IPR009071+89-162_90-151_90-158+\|IPR036910+85-153_85-169+\|IPR050140+53-355+	SM00398+89-162+	PF00505+90-151+HMG_(high_mobility_group)_box	—	PTHR10270+53-355+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-221;331-371	1.000	222-330	1i11_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.975	40379.990	9.026	12.000	20.755	8.895	55.526	44.474	12.938	7.817	55.256

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	4391.385	5642.698	2794.608	1851.248	1689.854	1343.386	2817.813	3198.760	766.178	11385.786	6834.526

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.243	-1.745	-0.486	-0.163	-0.316	1.080	1.153	—	—	—	—	—	—

No JSON data available for plots.

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