Hg_chrom7_TN10mRNA_14402
Organism: Heterodera glycines Gene Locus: chr7:6568442-6569413 Feature type: polypeptideProtein Sequence
Length: 178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 1.307 | 1.634 | 0.194 | 1.873 | 1.008 | 0.602 | 0.843 | 0.999 | 0.759 | 1.192 | 2.644 | 2.497 | 0.432 | 1.261 | 0.562 | 1.197 | 0.596 | 0.0 | 0.33 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13594
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.663
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
2-25
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.340
|
0.225
|
0.016
|
0.682
|
0.107
|
0.054
|
0.251
|
0.001
|
0.270
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011498
|
1.000
|
1.000
|
Hsc_gene_12565.t1
|
Hsc_gene_12565.t1
|
— |
Q09510.1 Myosin regulatory light chain [Caenorhabditis elegans]
|
KAI3413604.1 Myosin regulatory light chain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.810|GO:0110165_0.771|GO:0008150_0.738|GO:0005622_0.720|GO:0005737_0.678|GO:0043226_0.637|GO:0043229_0.571
|
IPR002048+32-67_36-64_36-92_101-136_103-165_105-133_106-166+|IPR011992+35-168+|IPR018247+45-57+|IPR050403+1-174+
|
SM00054+36-64_105-133+
|
PF13499+36-92_103-165+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000007+8-98+Putative_myosin_regulatory_light_chain_sqh
|
PTHR23049+1-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;172-178
|
1.000
|
9-171
|
9szr_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
20647.070
|
4.566
|
-9.500
|
35.955
|
11.798
|
56.742
|
43.258
|
15.730
|
20.225
|
44.382
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2608.202
|
576.814
|
1201.191
|
1049.015
|
1422.067
|
2055.424
|
2819.012
|
6412.445
|
2769.634
|
3507.672
|
3191.370
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
0.726
|
— |
0.407
|
0.546
|
0.467
|
1.543
|
-1.045
|
— | — | — | — | — |
No JSON data available for plots.