Hg_chrom7_TN10mRNA_14404
Organism: Heterodera glycines Gene Locus: chr7:6571916-6574108 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.676 | 0.676 | 1.268 | 0.401 | 1.26 | 0.596 | 0.623 | 1.163 | 1.55 | 1.021 | 1.409 | 1.368 | 1.938 | 1.342 | 0.712 | 0.581 | 0.477 | 0.881 | 2.683 | 1.71 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13596
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.037
|
0.956
|
0.003
|
0.131
|
0.042
|
0.014
|
0.057
|
0.009
|
0.045
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011500
|
1.000
|
1.000
|
Hsc_gene_12563.t1
|
Hsc_gene_12563.t1
|
— |
P55954.2 Cytochrome c oxidase subunit 5A, mitochondrial [Caenorhabditis elegans]
|
KAI3413606.1 Cytochrome c oxidase subunit 5A [Globodera pallida]
|
No
|
-0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005743|GO:0005751|GO:0006123
|
GO:0005575_0.798|GO:0110165_0.794|GO:0008150_0.726|GO:0016020_0.708|GO:0005622_0.679|GO:0005737_0.679|GO:0009987_0.650|GO:0043226_0.633|GO:0043229_0.612|GO:0043227_0.600|GO:0043231_0.584
|
IPR003204+23-140_33-138_38-138+|IPR036545+34-140_36-141+
|
— |
PF02284+38-138+Cytochrome_c_oxidase_subunit_Va
|
— |
PTHR14200+23-140+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-172
|
8pw7_r
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
20268.340
|
6.108
|
-1.000
|
29.651
|
18.605
|
41.860
|
58.140
|
15.116
|
14.535
|
41.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
3397.742
|
944.464
|
2576.173
|
2857.724
|
4253.252
|
3861.278
|
2578.083
|
4175.530
|
1530.191
|
5750.038
|
3941.532
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.219
|
1.461
|
0.258
|
0.541
|
— |
-0.573
|
— |
-0.553
|
— | — | — | — | — |
No JSON data available for plots.