SCN Proteipedia

Hg_chrom7_TN10mRNA_14405

Organism: Heterodera glycines Gene Locus: chr7:6575115-6580114 Feature type: polypeptide

Protein Sequence

Length: 1,133

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.78	1.191	0.867	0.73	0.883	1.018	0.893	1.28	1.353	1.312	0.923	2.596	1.005	0.747	1.243	0.971	0.781	0.99	0.272	1.064	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13597	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.881

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKELICEVMSTSQDRKSKT	—	—	—	—	—	—	0.000	—	—	0.691	0.103	0.024	0.325	0.093	0.060	0.030	0.075	0.163	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011501	1.000	1.000	Hsc_gene_12562.t1	Hsc_gene_12562.t1	—	P59470.2 DNA-directed RNA polymerase III subunit RPC2 [Mus musculus]	KAF7639916.1 DNA-directed RNA polymerase subunit beta [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003899\|GO:0006351\|GO:0032549	GO:0005575_0.817\|GO:0008150_0.801\|GO:0110165_0.744\|GO:0005622_0.670\|GO:0009987_0.667\|GO:0016020_0.621\|GO:0043226_0.618\|GO:0043229_0.604\|GO:0008152_0.577\|GO:0044238_0.549\|GO:0044237_0.547\|GO:0009058_0.539\|GO:0043227_0.529\|GO:0043170_0.523\|GO:0043231_0.516\|GO:0044249_0.514\|GO:0003674_0.505	IPR007120+660-1039+\|IPR007121+888-900+\|IPR007641+1041-1126+\|IPR007642+174-354+\|IPR007644+24-397+\|IPR007645+429-493+\|IPR007646+530-591+\|IPR014724+690-884+\|IPR015712+8-1127_25-1125+\|IPR037033+661-1025+\|IPR037034+175-339+	—	PF00562+660-1039+RNA_polymerase_Rpb2,_domain_6\|PF04560+1041-1126+RNA_polymerase_Rpb2,_domain_7\|PF04561+174-354+RNA_polymerase_Rpb2,_domain_2\|PF04563+24-397+RNA_polymerase_beta_subunit\|PF04565+429-493+RNA_polymerase_Rpb2,_domain_3\|PF04566+530-591+RNA_polymerase_Rpb2,_domain_4	G3DSA:2.40.270.10:FF:000006+660-759+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:2.40.270.10:FF:000011+877-1025+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:3.90.1100.10:FF:000021+340-541+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:3.90.1800.10:FF:000003+1027-1128+DNA-directed_RNA_polymerase_subunit_beta	PTHR20856+8-1127+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1133	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.838	126746.520	9.040	38.500	24.801	10.150	45.455	54.545	14.740	10.062	48.191

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	greenyellow	1581.251	2559.893	1460.735	2257.215	2464.590	1845.199	2667.804	1099.099	839.559	905.354	877.156

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.039	-0.319	0.736	—	-0.402	0.542	-0.852	1.422	—	—	—	—	—

No JSON data available for plots.

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