Hg_chrom7_TN10mRNA_14406
Organism: Heterodera glycines Gene Locus: chr7:6580705-6582697 Feature type: polypeptideProtein Sequence
Length: 436
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.12 | 0.5 | 1.107 | 0.382 | 0.647 | 0.819 | 1.147 | 0.663 | 2.325 | 0.452 | 0.809 | 1.465 | 0.794 | 1.919 | 1.311 | 0.714 | 1.216 | 1.235 | 0.405 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13598
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.781
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRRLVQTMLGRKKSL,RRSSSGASVGERRMKL,KKTDDDGKRNGAAGGKKGR,RRTTRERREVPERVTRRKY
|
51-104
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.058
|
0.063
|
0.013
|
0.125
|
0.401
|
0.149
|
0.109
|
0.074
|
0.833
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011502
|
1.000
|
1.000
|
Hsc_gene_12561.t1
|
Hsc_gene_12561.t1
|
— |
P34488.4 Putative G-protein coupled receptor F59B2.13 [Caenorhabditis elegans]
|
KAF7636427.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+23-47_42-335_58-79_108-130_213-236_325-351+|IPR017452+38-343+
|
— |
PF00001+42-335+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR46895+3-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
368-436
|
1.000
|
1-367
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
48401.890
|
11.219
|
37.000
|
19.725
|
10.550
|
40.596
|
59.404
|
14.679
|
5.046
|
50.688
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
139.295
|
229.104
|
82.605
|
95.852
|
71.104
|
164.363
|
161.626
|
483.351
|
0.691
|
125.894
|
72.236
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.704
|
-1.394
|
0.326
|
-0.462
|
1.222
|
— |
1.454
|
-1.440
|
— |
6.956
|
— | — | — |
No JSON data available for plots.