Hg_chrom7_TN10mRNA_14407
Organism: Heterodera glycines Gene Locus: chr7:6583177-6588814 Feature type: polypeptideProtein Sequence
Length: 1,014
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.86 | 0.596 | 0.843 | 0.442 | 2.17 | 1.239 | 0.587 | 0.888 | 0.833 | 0.986 | 0.926 | 1.856 | 0.877 | 0.797 | 1.932 | 1.155 | 1.116 | 0.643 | 0.986 | 0.609 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13599
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.740
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
SPQRP,PRRKADGRRKSLR,KREKEKEEEMRERER,RRREREKEEQKEREK,KKDLVIQTDDSYLRIARR,KKMTKWLSEKWLCYRERIK,RKEREKEERDRDEKREKEK,RRKSLRFLEPIRDSFRPKR,RKSLRFLEPIRDSFRPKRQ
|
— | — |
97-128
|
0.991
|
— | — |
0.000
|
— | — |
0.109
|
0.118
|
0.108
|
0.176
|
0.271
|
0.348
|
0.228
|
0.007
|
0.769
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011503
|
1.000
|
1.000
|
Hsc_gene_12560.t1
|
Hsc_gene_12560.t1
|
— |
Q18120.2 TWiK family of potassium channels protein 18 [Caenorhabditis elegans]
|
KAI1729250.1 ion channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005267|GO:0016020|GO:0071805
|
GO:0008150_0.972|GO:0009987_0.905|GO:0051179_0.885|GO:0006810_0.871|GO:0051234_0.871|GO:0003674_0.812|GO:0005575_0.805|GO:0110165_0.804|GO:0016020_0.777|GO:0006811_0.728|GO:0055085_0.699|GO:0005886_0.696|GO:0071944_0.696|GO:0006812_0.693|GO:0030001_0.693|GO:0034220_0.692|GO:0005215_0.671|GO:0005216_0.671|GO:0015075_0.671|GO:0015267_0.671|GO:0022803_0.671|GO:0022857_0.671|GO:0098660_0.667|GO:0006813_0.658|GO:0098655_0.657|GO:0005261_0.649|GO:0008324_0.649|GO:0098662_0.647|GO:0071805_0.627|GO:0015318_0.624|GO:0022890_0.624|GO:0046873_0.624|GO:0015079_0.606|GO:0005267_0.605|GO:0065007_0.505
|
IPR003280+138-623_235-263_377-386+|IPR013099+222-279_345-418+
|
— |
PF07885+222-279_345-418+Ion_channel
|
— |
PTHR11003+138-623+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-109;480-1014
|
1.000
|
110-479
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
116536.570
|
5.596
|
-12.000
|
35.010
|
8.284
|
57.298
|
42.702
|
17.357
|
17.653
|
44.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
454.587
|
600.405
|
690.927
|
727.540
|
288.423
|
287.094
|
129.795
|
926.502
|
16.499
|
607.437
|
354.178
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.140
|
0.183
|
-1.367
|
— |
-1.135
|
1.594
|
-2.697
|
-5.320
|
5.666
|
— | — | — |
No JSON data available for plots.