Hg_chrom7_TN10mRNA_14409
Organism: Heterodera glycines Gene Locus: chr7:6590684-6595180 Feature type: polypeptideProtein Sequence
Length: 966
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.734 | 1.324 | 0.922 | 0.571 | 0.845 | 1.593 | 0.665 | 1.915 | 0.897 | 1.119 | 0.784 | 0.853 | 1.064 | 1.015 | 1.606 | 1.789 | 0.899 | 0.627 | 0.398 | 0.578 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13601
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
RRDRKWNGNSRKSRI,RRVRSTHSGPSAKKQRPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.318
|
0.163
|
0.022
|
0.559
|
0.225
|
0.135
|
0.116
|
0.059
|
0.607
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004612
|
1.000
|
2.000
|
Hsc_gene_12558.t1;Hsc_gene_12558.t2
|
Hsc_gene_12558.t1;Hsc_gene_12558.t2
|
— |
Q17353.1 Partitioning defective protein 3 [Caenorhabditis elegans]
|
KAI1729247.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.908|GO:0110165_0.884|GO:0008150_0.786|GO:0016020_0.721|GO:0009987_0.719|GO:0005622_0.684|GO:0071944_0.572|GO:0032501_0.549|GO:0032502_0.547|GO:0048856_0.547|GO:0005886_0.541|GO:0043226_0.532|GO:0065007_0.527|GO:0016043_0.517|GO:0071840_0.517|GO:0050789_0.507
|
IPR001478+173-249_183-264_184-249_295-377_297-366_305-381_427-485_430-487_434-487_436-520+|IPR036034+150-253_161-250_283-397_288-384_407-519_421-528+|IPR052213+87-253+
|
SM00228+183-264_305-381_436-520+
|
PF00595+434-487+PDZ_domain
|
— |
PTHR16484+87-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-153;513-966
|
1.000
|
154-512
|
1wg6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.956
|
107960.470
|
9.834
|
46.500
|
27.019
|
10.145
|
56.936
|
43.064
|
16.874
|
10.145
|
51.760
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkturquoise
|
1182.234
|
2143.305
|
1162.588
|
924.298
|
1108.947
|
1036.909
|
2409.253
|
1171.831
|
870.516
|
785.461
|
821.913
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.113
|
-1.351
|
-0.221
|
0.232
|
— |
1.226
|
— |
1.182
|
— | — | — | — | — |
No JSON data available for plots.