SCN Proteipedia

Hg_chrom7_TN10mRNA_14410

Organism: Heterodera glycines Gene Locus: chr7:6595892-6599121 Feature type: polypeptide

Protein Sequence

Length: 754

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.848	1.11	1.133	0.686	1.149	1.258	0.474	0.862	1.208	1.362	1.025	1.56	1.068	0.944	1.299	0.72	0.978	1.045	0.612	1.014	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13602	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Not_Clustered	0.227

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRIR,KRKL,RKVSDEFKVPAVKKQKF	—	—	—	—	—	—	0.000	—	—	0.828	0.144	0.018	0.413	0.059	0.051	0.052	0.024	0.047	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000540	5.000	2.000	Hsc_gene_12557.t1;Hsc_gene_8847.t1	Hsc_gene_12557.t1	—	Q20875.1 Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Caenorhabditis elegans]	KAI3413612.1 Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003724\|GO:0005524	GO:0005575_0.854\|GO:0110165_0.850\|GO:0005622_0.801\|GO:0008150_0.778\|GO:0016020_0.750\|GO:0043226_0.722\|GO:0043229_0.713\|GO:0009987_0.696\|GO:0043227_0.685\|GO:0043231_0.662\|GO:0003674_0.573\|GO:0008152_0.555\|GO:0005634_0.548\|GO:0044238_0.542\|GO:0044237_0.530\|GO:0009058_0.517\|GO:0043170_0.511\|GO:0044249_0.501	IPR001650+299-437_299-479_328-438+\|IPR007502+499-589+\|IPR011545+103-257+\|IPR011709+650-726+\|IPR014001+93-283_105-274+\|IPR027417+41-276_75-675_277-459+\|IPR044756+83-273+\|IPR048333+500-528+	SM00487+93-283+\|SM00490+328-438+\|SM00847+499-589+	PF00270+103-257+DEAD/DEAH_box_helicase\|PF00271+299-437+Helicase_conserved_C-terminal_domain\|PF04408+500-528+Helicase_associated_domain_(HA2),_winged-helix\|PF07717+650-726+Oligonucleotide/oligosaccharide-binding_(OB)-fold\|PF21010+529-588+Helicase_associated_domain_(HA2),_ratchet-like	G3DSA:1.20.120.1080:FF:000003+483-591+Pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP43\|G3DSA:3.40.50.300:FF:000007+277-459+Pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase\|G3DSA:3.40.50.300:FF:000324+43-276+pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX15	PTHR18934+43-730+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-70	1.000	71-754	8ro1_DX	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.570	86072.840	7.380	6.500	27.984	9.814	48.674	51.326	14.854	13.130	47.082

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	yellow	2279.648	2217.323	2099.871	2339.240	2682.184	2308.433	2325.275	3001.534	2005.948	2103.803	2061.865

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.308	—	0.264	0.166	-0.201	—	0.274	-0.226	—	—	—	—	—

No JSON data available for plots.

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