Hg_chrom7_TN10mRNA_14412
Organism: Heterodera glycines Gene Locus: chr7:6603495-6605687 Feature type: polypeptideProtein Sequence
Length: 488
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 1.001 | 1.08 | 0.919 | 1.4 | 0.841 | 0.756 | 0.922 | 1.093 | 1.274 | 1.304 | 0.844 | 1.195 | 0.591 | 1.255 | 0.937 | 0.84 | 1.118 | 0.473 | 1.145 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13604
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSADNESISTHCHDERKR,RKRTNKGEIDTIFTKRRRF,KRTNKGEIDTIFTKRRRFS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.907
|
0.145
|
0.029
|
0.212
|
0.020
|
0.025
|
0.032
|
0.045
|
0.054
|
0.007
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004613
|
1.000
|
2.000
|
Hsc_gene_12555.t1;Hsc_gene_12555.t2
|
Hsc_gene_12555.t1;Hsc_gene_12555.t2
|
— |
Q9UQ84.2 Exonuclease 1 [Homo sapiens]
|
KAI1722705.1 XPG i-region domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003824|GO:0004518|GO:0046872
|
GO:0008150_0.877|GO:0009987_0.808|GO:0003674_0.744|GO:0050896_0.729|GO:0008152_0.696|GO:0044238_0.690|GO:0043170_0.684|GO:0005575_0.667|GO:0110165_0.660|GO:0006139_0.653|GO:0090304_0.639|GO:0006259_0.613|GO:0005622_0.592|GO:0016020_0.579|GO:0051716_0.566|GO:0043226_0.552|GO:0006950_0.526|GO:0043229_0.521
|
IPR006084+1-465_24-38_73-92_138-155_159-179_219-234+|IPR006085+1-97_1-99+|IPR006086+139-209_142-229+|IPR008918+216-250+|IPR029060+2-229+|IPR036279+218-312+|IPR044752+1-204+
|
SM00279+216-250+|SM00484+139-209+|SM00485+1-99+
|
PF00752+1-97+XPG_N-terminal_domain|PF00867+142-229+XPG_I-region
|
G3DSA:3.40.50.1010:FF:000111+1-207+Exonuclease_1
|
PTHR11081+1-465+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
389-488
|
1.000
|
1-388
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
55427.270
|
7.709
|
6.500
|
30.943
|
10.656
|
50.205
|
49.795
|
16.598
|
14.344
|
47.131
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1381.266
|
1399.878
|
1162.759
|
1207.401
|
1305.139
|
1102.748
|
1578.606
|
1234.150
|
2104.426
|
1093.213
|
1526.590
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.498
|
-0.350
|
0.163
|
— |
-0.228
|
0.528
|
— |
0.498
|
— | — | — | — | — |
No JSON data available for plots.