Hg_chrom7_TN10mRNA_14414
Organism: Heterodera glycines Gene Locus: chr7:6608092-6608791 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 0.975 | 0.871 | 0.0 | 3.293 | 0.307 | 0.642 | 0.299 | 0.798 | 0.486 | 2.177 | 1.057 | 0.665 | 1.036 | 2.933 | 0.855 | 0.196 | 0.454 | 0.0 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13606
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.834
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRAKTAYDLMRIRLKRLEK,EERRKARRDEEEKKSAKKREKRLRQKARKKGAKRKKGG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.884
|
0.063
|
0.002
|
0.278
|
0.041
|
0.009
|
0.038
|
0.002
|
0.038
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011507
|
1.000
|
1.000
|
Hsc_gene_12553.t1
|
Hsc_gene_12553.t1
|
— |
Q5R5J3.1 PRKR-interacting protein 1 [Pongo abelii]
|
KAI1729240.1 PRKR-interacting protein 1 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003725
|
GO:0005575_0.954|GO:0110165_0.954|GO:0005622_0.945|GO:0043226_0.926|GO:0043229_0.925|GO:0008150_0.911|GO:0016020_0.895|GO:0043227_0.855|GO:0005634_0.843|GO:0043231_0.843|GO:0031974_0.782|GO:0031981_0.782|GO:0043233_0.782|GO:0070013_0.782|GO:0043228_0.628|GO:0043232_0.628|GO:0009987_0.553|GO:0003674_0.552|GO:0005488_0.552|GO:0065007_0.531|GO:0050789_0.521|GO:0050794_0.511
|
IPR009548+12-163_33-162+
|
— |
PF06658+33-162+Protein_of_unknown_function_(DUF1168)
|
— |
PTHR13507+12-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-167
|
0.000
|
— |
6qdv_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
19692.010
|
10.195
|
7.500
|
53.892
|
4.192
|
66.467
|
33.533
|
29.341
|
24.551
|
37.126
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
780.532
|
504.321
|
590.097
|
604.884
|
649.109
|
590.185
|
733.038
|
562.677
|
1694.002
|
556.460
|
1043.978
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.325
|
— |
0.526
|
1.482
|
— | — | — | — |
No JSON data available for plots.