Hg_chrom7_TN10mRNA_14416
Organism: Heterodera glycines Gene Locus: chr7:6610486-6613088 Feature type: polypeptideProtein Sequence
Length: 495
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 1.081 | 0.845 | 0.348 | 0.673 | 0.932 | 0.794 | 1.313 | 1.077 | 1.583 | 0.704 | 1.426 | 1.74 | 1.243 | 1.278 | 0.837 | 0.828 | 0.979 | 1.243 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13608
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRKLLTEMGGKRKVI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.137
|
0.416
|
0.109
|
0.180
|
0.826
|
0.441
|
0.383
|
0.028
|
0.220
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011508
|
1.000
|
1.000
|
Hsc_gene_12552.t1
|
Hsc_gene_12552.t1
|
— |
Q6MG55.1 Phosphatidylserine lipase ABHD16A [Rattus norvegicus]
|
KAF7636436.1 AB hydrolase-1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.756|GO:0009987_0.666|GO:0003674_0.660|GO:0005575_0.582|GO:0110165_0.580|GO:0008152_0.567|GO:0044238_0.544|GO:0003824_0.527
|
IPR000073+228-372+|IPR029058+199-382_203-429+
|
— |
PF00561+228-372+alpha/beta_hydrolase_fold|PF22990+4-117+Phosphatidylserine_Lipase_ABHD16_N-terminal_domain
|
— |
PTHR12277+161-411+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-495
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
55678.390
|
9.636
|
17.500
|
22.222
|
13.535
|
41.414
|
58.586
|
13.535
|
8.687
|
48.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
1334.962
|
1336.237
|
1076.599
|
1397.180
|
1715.264
|
1782.697
|
2291.749
|
1352.230
|
624.835
|
1264.849
|
990.557
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.542
|
— |
0.485
|
0.264
|
— |
0.373
|
-0.504
|
0.904
|
— | — | — | — | — |
No JSON data available for plots.