Hg_chrom7_TN10mRNA_14419
Organism: Heterodera glycines Gene Locus: chr7:6620880-6623174 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.958 | 0.684 | 0.891 | 0.0 | 2.745 | 1.458 | 0.91 | 0.49 | 0.436 | 0.556 | 1.723 | 1.845 | 0.381 | 1.282 | 2.001 | 0.728 | 0.482 | 0.772 | 0.302 | 0.346 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13611
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRHEEEEAAKLLDFEEKRR,KRKEEQKQMEAEMAARRRQ,RKEEQKQMEAEMAARRRQD,RRRQDEERRRQEEEERKAK,RRQDEERRRQEEEERKAKS,RRQEEEERKAKSEANKAKR,RKAKSEANKAKREEEKRKR,GERRNKFEHPPPKPEPKIAHGSGRPPP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.264
|
0.092
|
0.015
|
0.770
|
0.176
|
0.147
|
0.239
|
0.001
|
0.235
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011511
|
1.000
|
1.000
|
Hsc_gene_12549.t1
|
Hsc_gene_12549.t1
|
— |
Q27371.1 Troponin T [Caenorhabditis elegans]
|
KAI1720100.1 troponin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005861|GO:0006937
|
GO:0005575_0.960|GO:0110165_0.955|GO:0005622_0.937|GO:0008150_0.930|GO:0009987_0.905|GO:0043226_0.904|GO:0043229_0.891|GO:0003674_0.888|GO:0005488_0.888|GO:0043228_0.875|GO:0043232_0.875|GO:0065007_0.871|GO:0050789_0.859|GO:0050794_0.840|GO:0005515_0.830|GO:0071840_0.820|GO:0032991_0.802|GO:0016043_0.797|GO:0032502_0.797|GO:0048856_0.797|GO:0005737_0.791|GO:0032501_0.787|GO:0050896_0.759|GO:0048869_0.758|GO:0030154_0.752|GO:0048468_0.750|GO:0051716_0.742|GO:0006996_0.741|GO:0044085_0.733|GO:0007010_0.728|GO:0022607_0.715|GO:0007154_0.714|GO:0023052_0.714|GO:0048513_0.712|GO:0009888_0.702|GO:0007165_0.700|GO:0051239_0.700|GO:0070925_0.699|GO:0005856_0.698|GO:0009653_0.697|GO:0099080_0.691|GO:0035556_0.687|GO:0030029_0.685|GO:0030036_0.685|GO:0097435_0.685|GO:0140694_0.685|GO:0003008_0.683|GO:0007015_0.682|GO:0008092_0.682|GO:0061061_0.681|GO:0042592_0.680|GO:0048646_0.680|GO:0141124_0.679|GO:0009887_0.676|GO:0019725_0.675|GO:0044057_0.675|GO:0007005_0.674|GO:0007517_0.674|GO:0036094_0.674|GO:0043167_0.674|GO:0048878_0.674|GO:0003012_0.673|GO:0031032_0.673|GO:0042692_0.673|GO:0003013_0.670|GO:0003015_0.670|GO:0006873_0.670|GO:0006874_0.670|GO:0006936_0.670|GO:0006937_0.670|GO:0006941_0.670|GO:0006942_0.670|GO:0007498_0.670|GO:0008015_0.670|GO:0008016_0.670|GO:0010882_0.670|GO:0010927_0.670|GO:0019722_0.670|GO:0030003_0.670|GO:0030239_0.670|GO:0032989_0.670|GO:0045214_0.670|GO:0046716_0.670|GO:0048644_0.670|GO:0050801_0.670|GO:0051146_0.670|GO:0055001_0.670|GO:0055002_0.670|GO:0055074_0.670|GO:0055080_0.670|GO:0055082_0.670|GO:0055117_0.670|GO:0060047_0.670|GO:0060048_0.670|GO:0071689_0.670|GO:0090257_0.670|GO:0098771_0.670|GO:1903522_0.670|GO:0043169_0.664|GO:0046872_0.662|GO:0005509_0.650|GO:0005523_0.650|GO:0099081_0.650|GO:0099512_0.650|GO:0015629_0.560|GO:0030016_0.551|GO:0043292_0.551|GO:0030017_0.548|GO:0005861_0.540|GO:0005865_0.540|GO:0036379_0.540
|
IPR027707+1-356+|IPR038077+278-361_278-399+
|
— | — | — |
PTHR11521+1-356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-510
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
57956.560
|
7.026
|
1.500
|
43.529
|
3.922
|
60.196
|
39.804
|
22.157
|
21.373
|
43.529
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
3662.915
|
4676.123
|
1349.619
|
2437.820
|
2949.448
|
14557.197
|
2082.537
|
8649.248
|
790.882
|
1668.846
|
1292.576
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.023
|
-1.077
|
0.963
|
0.243
|
2.318
|
-2.794
|
-0.866
|
-1.907
|
— |
1.792
|
— | — | — |
No JSON data available for plots.