SCN Proteipedia

Hg_chrom7_TN10mRNA_14421

Organism: Heterodera glycines Gene Locus: chr7:6636954-6639428 Feature type: polypeptide

Protein Sequence

Length: 419

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.526	1.11	0.26	0.247	0.835	2.693	0.909	1.671	0.424	0.935	0.651	1.404	0.862	1.606	0.877	1.671	0.978	0.253	0.734	0.562	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13613	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	GTKKRQPKGEGKRSKRA	—	—	—	—	—	—	0.000	—	—	0.844	0.124	0.009	0.320	0.044	0.070	0.067	0.011	0.045	0.046

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011513	1.000	1.000	Hsc_gene_12545.t1	Hsc_gene_12545.t1	—	Q98SH9.1 Homeobox protein Hox-C1a [Danio rerio]	KAI1721361.1 homeobox domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0003700\|GO:0006355\|GO:0006357\|GO:0043565	GO:0008150_0.939\|GO:0032502_0.841\|GO:0048856_0.841\|GO:0032501_0.782\|GO:0007275_0.754\|GO:0009987_0.728\|GO:0005575_0.669\|GO:0110165_0.663\|GO:0048731_0.652\|GO:0003674_0.650\|GO:0005488_0.650\|GO:0043226_0.644\|GO:0005622_0.640\|GO:0003676_0.639\|GO:0097159_0.639\|GO:0043229_0.633\|GO:0003677_0.627\|GO:0016020_0.602\|GO:0048513_0.596\|GO:0043565_0.584\|GO:0065007_0.578\|GO:0050789_0.576\|GO:0050794_0.574\|GO:0005634_0.547\|GO:0043227_0.547\|GO:0043231_0.547\|GO:0006139_0.523\|GO:0008152_0.523\|GO:0016070_0.523\|GO:0019219_0.523\|GO:0019222_0.523\|GO:0043170_0.523\|GO:0044238_0.523\|GO:0051252_0.523\|GO:0060255_0.523\|GO:0080090_0.523\|GO:0090304_0.523\|GO:0031323_0.521\|GO:0044237_0.521\|GO:0009058_0.516\|GO:0009059_0.516\|GO:0009889_0.516\|GO:0010556_0.516\|GO:0031326_0.516\|GO:0032774_0.516\|GO:0034654_0.516\|GO:0044249_0.516\|GO:0141187_0.516\|GO:2001141_0.516\|GO:0006351_0.514\|GO:0006355_0.514\|GO:0010467_0.514\|GO:0010468_0.514\|GO:0009653_0.508	IPR001356+296-358_299-353_300-346_300-354+\|IPR009057+298-356+\|IPR017970+329-352+\|IPR020479+318-329_333-343_343-352+\|IPR046327+33-399+	SM00389+296-358+	PF00046+299-353+Homeodomain	—	PTHR45946+33-399+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-84;121-419	1.000	85-120	1b72_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.970	44772.550	9.897	16.000	18.377	9.308	51.313	48.687	11.933	6.444	55.370

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1132.286	2901.603	1783.203	1427.397	1208.146	1675.323	391.593	1569.042	360.290	574.921	482.936

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.931	-1.161	-0.213	-0.274	0.487	-2.088	—	-1.862	—	—	—	—	—

No JSON data available for plots.

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