Hg_chrom7_TN10mRNA_14423
Organism: Heterodera glycines Gene Locus: chr7:6645982-6646721 Feature type: polypeptideProtein Sequence
Length: 121
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.577 | 0.577 | 1.503 | 1.14 | 1.791 | 1.06 | 0.394 | 2.066 | 0.367 | 0.558 | 1.252 | 3.403 | 1.837 | 1.589 | 1.518 | 0.472 | 0.271 | 0.376 | 2.543 | 1.702 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13615
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.160
|
0.666
|
0.159
|
0.515
|
0.177
|
0.145
|
0.187
|
0.007
|
0.105
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011515
|
1.000
|
1.000
|
Hsc_gene_12543.t1
|
Hsc_gene_12543.t1
|
— | — |
NP_497618.1 Cytochrome oxidase c subunit VIb [Caenorhabditis elegans];CCD73863.1 Cytochrome oxidase c subunit VIb [Caenorhabditis elegans]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005739|GO:0045277
|
GO:0005575_0.897|GO:0110165_0.885|GO:0005622_0.806|GO:0016020_0.782|GO:0043226_0.750|GO:0043229_0.731|GO:0005737_0.728|GO:0043227_0.702|GO:0043231_0.686
|
IPR003213+5-120+|IPR036549+33-119_47-118+|IPR048280+56-116+
|
— |
PF02297+56-116+Cytochrome_oxidase_c_subunit_VIb
|
— |
PTHR11387+5-120+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33
|
1.000
|
34-121
|
8q1b_j
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
14864.790
|
6.000
|
-1.500
|
38.843
|
19.835
|
50.413
|
49.587
|
19.835
|
19.008
|
38.017
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3694.443
|
947.051
|
2735.321
|
2715.080
|
3937.795
|
4208.839
|
2388.830
|
4392.552
|
2831.514
|
6042.504
|
4666.366
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.302
|
1.382
|
— |
0.504
|
— |
-0.806
|
— |
-0.735
|
— | — | — | — | — |
No JSON data available for plots.