Hg_chrom7_TN10mRNA_14425
Organism: Heterodera glycines Gene Locus: chr7:6647725-6648998 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 1.59 | 1.243 | 1.326 | 1.211 | 1.315 | 0.611 | 0.855 | 1.14 | 1.213 | 0.583 | 1.508 | 1.781 | 0.822 | 0.959 | 1.16 | 0.981 | 0.648 | 0.329 | 0.126 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13617
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.458
|
0.217
|
0.008
|
0.659
|
0.067
|
0.343
|
0.577
|
0.049
|
0.091
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011517
|
1.000
|
1.000
|
Hsc_gene_12541.t1
|
— | — | — |
KAI3413624.1 Protein Xrp2 [Globodera pallida]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096
|
GO:0005575_0.881|GO:0110165_0.874|GO:0005622_0.798|GO:0008150_0.711|GO:0009987_0.651|GO:0005737_0.591|GO:0043226_0.556|GO:0043229_0.534
|
IPR006599+75-112_113-147+|IPR012945+68-184+|IPR016098+48-229+|IPR017901+8-186+|IPR039093+35-190+
|
SM00673+75-112_113-147+
|
PF07986+68-184+Tubulin_binding_cofactor_C
|
— |
PTHR15440+35-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;218-234
|
1.000
|
28-217
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
25912.090
|
4.440
|
-11.000
|
24.359
|
8.974
|
50.427
|
49.573
|
10.256
|
14.103
|
53.419
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
868.452
|
373.925
|
557.195
|
716.917
|
736.177
|
662.470
|
1163.703
|
728.072
|
251.750
|
1758.740
|
1112.887
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.347
|
0.802
|
0.471
|
— | — |
0.824
|
— |
0.821
|
-2.908
|
— | — | — | — |
No JSON data available for plots.