Hg_chrom7_TN10mRNA_14428
Organism: Heterodera glycines Gene Locus: chr7:6669041-6672563 Feature type: polypeptideProtein Sequence
Length: 809
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.719 | 0.891 | 0.966 | 0.213 | 1.689 | 1.616 | 0.574 | 0.742 | 0.769 | 0.551 | 1.33 | 1.6 | 0.858 | 1.189 | 1.816 | 1.554 | 0.709 | 0.974 | 0.571 | 0.509 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13620
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
REEKRKK,KRAQGNSRKRGRERSR,RRSSRSRSVKRRRRDS,KRSPARDRRRDRTRRS,RKRGRERSRESSGDKGRKT,RKTMRRSSRSRSVKRRRRD,RRRDSSSSSYSSTSRSRSR,STSRSRSRSRSYRRSPKRSPARDRRRDRTRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.890
|
0.085
|
0.005
|
0.165
|
0.097
|
0.016
|
0.048
|
0.027
|
0.117
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002428
|
1.000
|
3.000
|
Hsc_gene_12536.t1;Hsc_gene_12536.t2;Hsc_gene_12536.t3
|
Hsc_gene_12536.t1;Hsc_gene_12536.t2;Hsc_gene_12536.t3
|
— | — |
KAI3413628.1 hypothetical protein GPALN_011117 [Globodera pallida]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;304-737;787-809
|
2.000
|
13-303;738-786
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
91994.800
|
9.844
|
24.000
|
34.611
|
7.046
|
59.951
|
40.049
|
19.159
|
15.451
|
48.578
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
2651.367
|
3871.480
|
3516.271
|
2734.627
|
2533.539
|
2130.913
|
2422.687
|
2551.426
|
3629.576
|
1467.194
|
2393.929
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.369
|
-0.639
|
-0.254
|
-0.142
|
-0.235
|
0.196
|
— | — | — | — | — | — | — |
No JSON data available for plots.