Hg_chrom7_TN10mRNA_14431
Organism: Heterodera glycines Gene Locus: chr7:6680021-6684228 Feature type: polypeptideProtein Sequence
Length: 868
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 1.206 | 0.922 | 0.596 | 0.749 | 1.152 | 0.713 | 1.382 | 1.357 | 1.401 | 0.786 | 0.949 | 1.632 | 0.421 | 1.129 | 1.366 | 0.888 | 1.187 | 0.798 | 0.576 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13623
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KVKK,RKKR,KRMAIAELESERLSFARKK
|
42-62
|
0.982
|
27-50
|
0.991
|
— | — |
0.000
|
— | — |
0.738
|
0.023
|
0.008
|
0.408
|
0.068
|
0.067
|
0.051
|
0.002
|
0.035
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011520
|
1.000
|
1.000
|
Hsc_gene_12533.t1
|
Hsc_gene_12533.t1
|
— |
P91341.2 Periodic tryptophan protein 2 homolog [Caenorhabditis elegans]
|
KAI1721350.1 WD domain, g-beta repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.851|GO:0110165_0.840|GO:0008150_0.825|GO:0005622_0.758|GO:0016020_0.714|GO:0009987_0.685|GO:0043226_0.678|GO:0043229_0.662|GO:0043227_0.607|GO:0043231_0.580
|
IPR001680+86-123_134-173_140-172_258-294_297-339_342-381_349-390_350-381_384-423_387-420_426-467_470-507_473-507_477-516_510-548_571-610_585-609_673-710+|IPR007148+751-857+|IPR011044+492-725+|IPR015943+15-225_247-457_458-747+|IPR019775+494-508+|IPR027145+1-861+|IPR036322+132-552+
|
SM00320+86-123_134-173_258-294_297-339_342-381_384-423_426-467_470-507_510-548_571-610_673-710+
|
PF00400+140-172_350-381_387-420_473-507_585-609+WD_domain,_G-beta_repeat|PF04003+751-857+Dip2/Utp12_Family
|
— |
PTHR19858+1-861+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-868
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
96550.460
|
8.609
|
22.000
|
23.041
|
11.636
|
47.696
|
52.304
|
13.479
|
9.562
|
50.576
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
1827.422
|
1793.031
|
1506.147
|
1942.827
|
2023.134
|
1829.921
|
2386.014
|
1530.149
|
1625.204
|
1896.859
|
1780.436
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.481
|
— |
0.476
|
— | — |
0.392
|
-0.363
|
0.782
|
— | — | — | — | — |
No JSON data available for plots.