Hg_chrom7_TN10mRNA_14432
Organism: Heterodera glycines Gene Locus: chr7:6684278-6687145 Feature type: polypeptideProtein Sequence
Length: 594
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.253 | 1.135 | 1.102 | 0.755 | 1.066 | 0.907 | 0.481 | 1.178 | 1.01 | 1.638 | 0.714 | 1.684 | 1.543 | 0.648 | 1.031 | 1.323 | 0.718 | 0.561 | 0.907 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13624
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
44-64
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.495
|
0.242
|
0.041
|
0.553
|
0.186
|
0.356
|
0.190
|
0.110
|
0.199
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011521
|
1.000
|
1.000
|
Hsc_gene_12532.t1
|
Hsc_gene_12532.t1
|
— | — |
KAI1721349.1 tetratricopeptide repeat protein 7B [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.953|GO:0009987_0.900|GO:0005575_0.577|GO:0110165_0.569|GO:0051179_0.566|GO:0051641_0.513|GO:0005622_0.502
|
IPR011990+20-301_186-573_420-581+|IPR019734+204-237_238-271_432-465_513-546_547-580+|IPR051722+43-592+
|
SM00028+204-237_238-271_432-465_513-546_547-580+
|
— | — |
PTHR23083+43-592+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-594
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
66592.740
|
5.387
|
-9.000
|
24.579
|
12.121
|
46.633
|
53.367
|
12.121
|
12.458
|
48.653
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
739.804
|
685.554
|
575.138
|
559.475
|
738.764
|
683.683
|
1710.761
|
564.736
|
305.251
|
938.413
|
667.058
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.483
|
-0.430
|
— |
0.369
|
— |
1.334
|
-0.378
|
1.741
|
— | — | — | — | — |
No JSON data available for plots.