Hg_chrom7_TN10mRNA_14434
Organism: Heterodera glycines Gene Locus: chr7:6691124-6693175 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.037 | 1.006 | 0.786 | 0.466 | 1.216 | 1.525 | 0.644 | 1.622 | 1.141 | 1.242 | 0.819 | 1.59 | 1.276 | 1.04 | 1.158 | 1.197 | 0.798 | 0.737 | 1.247 | 0.397 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13626
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.945
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.485
|
0.262
|
0.008
|
0.521
|
0.169
|
0.234
|
0.182
|
0.004
|
0.264
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011523
|
1.000
|
1.000
|
Hsc_gene_12530.t1
|
Hsc_gene_12530.t1
|
— | — |
KAI1729226.1 TLD domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.933|GO:0009987_0.874|GO:0065007_0.808|GO:0050789_0.802|GO:0050794_0.781|GO:0050896_0.775|GO:0051716_0.747|GO:0048519_0.720|GO:0006950_0.716|GO:0042221_0.708|GO:0048523_0.708|GO:0033554_0.695|GO:0048583_0.695|GO:0070887_0.688|GO:0080134_0.680|GO:0048585_0.679|GO:0006979_0.676|GO:0062197_0.676|GO:0034599_0.674|GO:0080135_0.670|GO:1900407_0.670|GO:1900408_0.670|GO:1902882_0.670|GO:1902883_0.670
|
IPR006571+172-319_179-319_206-273+
|
SM00584+179-319+
|
PF07534+206-273+TLD
|
— |
PTHR23354+134-279+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32;318-370
|
1.000
|
33-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
41472.110
|
7.093
|
4.000
|
25.946
|
10.811
|
49.459
|
50.541
|
14.324
|
11.622
|
47.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
895.843
|
2803.042
|
673.859
|
547.788
|
736.187
|
823.726
|
1434.076
|
1198.638
|
466.908
|
487.638
|
478.754
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.287
|
-2.493
|
-0.189
|
0.395
|
— |
0.811
|
0.442
|
0.400
|
— | — | — | — |
4.433
|
No JSON data available for plots.