Hg_chrom7_TN10mRNA_14436
Organism: Heterodera glycines Gene Locus: chr7:6693930-6694571 Feature type: polypeptideProtein Sequence
Length: 87
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.535 | 1.069 | 1.045 | 1.585 | 0.766 | 2.947 | 1.095 | 1.724 | 1.277 | 1.553 | 0.871 | 3.381 | 0.958 | 0.221 | 1.173 | 0.657 | 0.942 | 0.348 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13628
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.332
|
0.834
|
0.019
|
0.386
|
0.247
|
0.095
|
0.403
|
0.011
|
0.093
|
0.205
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011524
|
1.000
|
1.000
|
Hsc_gene_12529.t1
|
Hsc_gene_12529.t1
|
— |
Q9N408.1 Mitochondrial import inner membrane translocase subunit Tim8 [Caenorhabditis elegans]
|
KHN85462.1 Mitochondrial import inner membrane translocase subunit tim-8 [Toxocara canis]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.752|GO:0110165_0.738|GO:0005622_0.576|GO:0008150_0.549|GO:0016020_0.546|GO:0043226_0.518|GO:0043229_0.506|GO:0005737_0.501
|
IPR004217+15-79+|IPR035427+17-80_21-80+
|
— |
PF02953+15-79+Tim10/DDP_family_zinc_finger
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-87
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
9778.260
|
7.708
|
2.500
|
25.287
|
6.897
|
51.724
|
48.276
|
14.943
|
10.345
|
42.529
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
796.718
|
865.532
|
459.636
|
1108.521
|
1168.121
|
851.630
|
823.207
|
412.799
|
725.282
|
808.137
|
772.628
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.143
|
0.220
|
1.379
|
— |
-0.441
|
— |
-1.150
|
1.139
|
— | — | — | — | — |
No JSON data available for plots.