Hg_chrom7_TN10mRNA_14439
Organism: Heterodera glycines Gene Locus: chr7:6699371-6700481 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.96 | 0.564 | 1.059 | 0.335 | 0.728 | 1.12 | 1.156 | 1.699 | 1.187 | 1.181 | 0.736 | 1.999 | 2.023 | 0.653 | 1.189 | 1.248 | 0.716 | 0.956 | 0.373 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13631
|
— | — |
1.000
|
2.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.524
|
0.419
|
0.243
|
0.527
|
0.269
|
0.334
|
0.200
|
0.105
|
0.296
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011526
|
1.000
|
1.000
|
Hsc_gene_12527.t1
|
Hsc_gene_12527.t1
|
— |
Q0IXP9.1 Acylamino-acid-releasing enzyme 1 [Oryza sativa Japonica Group]
|
KAI1721343.1 prolyl oligopeptidase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008236
|
GO:0008150_0.753|GO:0005575_0.751|GO:0110165_0.744|GO:0003674_0.734|GO:0003824_0.602|GO:0005622_0.577|GO:0008152_0.565|GO:0016787_0.553|GO:0005737_0.541|GO:0140096_0.540|GO:0016020_0.538|GO:0043226_0.527|GO:0043229_0.517
|
IPR001375+2-204+|IPR029058+1-205_3-202+|IPR050585+2-203+
|
— |
PF00326+2-204+Prolyl_oligopeptidase_family
|
— |
PTHR43056+2-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
7c72_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
22648.880
|
7.962
|
4.500
|
24.272
|
13.107
|
44.175
|
55.825
|
14.078
|
10.194
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellowgreen
|
726.728
|
835.712
|
604.179
|
1211.152
|
1267.072
|
897.573
|
1296.090
|
634.237
|
175.251
|
518.240
|
371.245
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.698
|
0.398
|
1.112
|
— |
-0.482
|
0.542
|
-0.605
|
1.174
|
— |
2.972
|
— | — | — |
No JSON data available for plots.