Hg_chrom7_TN10mRNA_14440
Organism: Heterodera glycines Gene Locus: chr7:6701045-6703171 Feature type: polypeptideProtein Sequence
Length: 599
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.126 | 0.932 | 0.82 | 0.633 | 1.169 | 1.413 | 0.676 | 0.668 | 1.447 | 0.925 | 1.138 | 1.178 | 1.159 | 1.445 | 1.533 | 0.763 | 1.177 | 0.556 | 1.027 | 0.246 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13632
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.917
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRIGARREQFRKRDL,KKFDILPPLKKLVTLKRRI,KRKLISKLQNKKAAQKRWNKREERKAQTAKAMKARWAKKTA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.816
|
0.157
|
0.030
|
0.340
|
0.089
|
0.051
|
0.056
|
0.006
|
0.127
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002429
|
1.000
|
3.000
|
Hsc_gene_2337.t1;Hsc_gene_23910.t1;Hsc_gene_7074.t1
|
Hsc_gene_10951.t1;Hsc_gene_12113.t1
|
— | — | — |
WP_251602715
|
0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+251-408+
|
— |
PF06918+251-408+Protein_of_unknown_function_(DUF1280)
|
— |
PTHR31424+335-529+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-267
|
1.000
|
268-599
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
66902.580
|
10.050
|
25.000
|
27.880
|
7.679
|
49.917
|
50.083
|
16.361
|
11.519
|
49.416
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
69.577
|
16.891
|
38.367
|
27.601
|
70.190
|
66.587
|
14.618
|
41.397
|
95.983
|
129.042
|
114.874
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.953
|
0.571
|
— |
1.315
|
— |
-2.178
|
-0.796
|
-1.357
|
— | — | — | — | — |
No JSON data available for plots.