Hg_chrom7_TN10mRNA_14441
Organism: Heterodera glycines Gene Locus: chr7:6704358-6706549 Feature type: polypeptideProtein Sequence
Length: 407
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.771 | 1.6 | 1.117 | 0.678 | 1.229 | 1.071 | 0.38 | 0.86 | 1.638 | 1.461 | 0.893 | 0.578 | 1.229 | 0.662 | 1.404 | 0.983 | 0.604 | 1.005 | 0.945 | 1.084 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13633
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.950
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
14-41
|
0.927
|
— | — | — | — |
0.000
|
— | — |
0.275
|
0.434
|
0.045
|
0.480
|
0.174
|
0.103
|
0.349
|
0.057
|
0.074
|
0.361
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000914
|
5.000
|
1.000
|
Hsc_gene_12521.t1
|
Hsc_gene_12523.t1;Hsc_gene_12527.t1
|
— |
P34574.1 Probable clathrin heavy chain 1 [Caenorhabditis elegans]
|
KAI3413640.1 Clathrin heavy chain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006886|GO:0016192
|
GO:0008150_0.866|GO:0005575_0.841|GO:0110165_0.835|GO:0009987_0.804|GO:0005622_0.780|GO:0005737_0.737|GO:0016020_0.715|GO:0043226_0.688|GO:0051179_0.671|GO:0043229_0.665|GO:0006810_0.664|GO:0051234_0.664|GO:0071840_0.637|GO:0016043_0.624|GO:0043227_0.598|GO:0043231_0.579|GO:0071944_0.570|GO:0016192_0.566|GO:0003674_0.555|GO:0005886_0.525|GO:0006996_0.515
|
IPR000547+111-250_117-248_257-368_257-399_257-407+|IPR011990+19-167_168-328+|IPR016024+27-75_98-166_165-365+
|
SM00299+111-250_257-399+
|
PF00637+117-248_257-368+Region_in_Clathrin_and_VPS
|
G3DSA:1.25.40.10:FF:000005+166-319+Clathrin_heavy_chain
|
PTHR10292+30-75+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-407
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
46954.580
|
6.606
|
0.500
|
28.010
|
11.057
|
49.631
|
50.369
|
14.496
|
13.514
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
273.060
|
286.589
|
352.826
|
324.637
|
402.232
|
366.505
|
497.684
|
340.726
|
173.930
|
99.992
|
131.679
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.278
|
— |
0.450
|
— |
0.687
|
— | — | — | — | — |
No JSON data available for plots.