Hg_chrom7_TN10mRNA_14445
Organism: Heterodera glycines Gene Locus: chr7:6723015-6726327 Feature type: polypeptideProtein Sequence
Length: 274
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.019 | 1.443 | 0.597 | 1.258 | 0.608 | 0.655 | 0.478 | 1.642 | 1.298 | 1.332 | 0.719 | 0.859 | 1.014 | 0.842 | 1.788 | 1.199 | 1.556 | 0.885 | 0.842 | 0.322 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13637
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.519
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
17-38
|
0.998
|
35-85
|
0.994
|
— | — |
0.000
|
— | — |
0.149
|
0.479
|
0.115
|
0.583
|
0.186
|
0.044
|
0.512
|
0.018
|
0.083
|
0.441
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000914
|
5.000
|
1.000
|
Hsc_gene_12521.t1
|
Hsc_gene_12519.t1
|
— |
P34574.1 Probable clathrin heavy chain 1 [Caenorhabditis elegans]
|
KAI3413640.1 Clathrin heavy chain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006886|GO:0016192
|
GO:0008150_0.873|GO:0005575_0.862|GO:0110165_0.853|GO:0009987_0.814|GO:0005622_0.772|GO:0016020_0.702|GO:0005737_0.676|GO:0051179_0.670|GO:0051234_0.665|GO:0006810_0.663|GO:0043226_0.658|GO:0043229_0.650|GO:0071840_0.633|GO:0016043_0.627|GO:0071944_0.582|GO:0043227_0.581|GO:0016192_0.569|GO:0003674_0.557|GO:0043231_0.554|GO:0005886_0.522|GO:0006996_0.518|GO:0061024_0.502
|
IPR000547+161-219_161-274+|IPR011990+74-242+|IPR016024+100-221+
|
— |
PF00637+161-219+Region_in_Clathrin_and_VPS
|
— |
PTHR10292+100-222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
210-274
|
1.000
|
1-209
|
6yai_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
30489.140
|
10.542
|
22.500
|
23.723
|
9.124
|
50.365
|
49.635
|
16.788
|
6.934
|
54.015
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
241.395
|
64.931
|
97.186
|
83.246
|
104.084
|
119.913
|
112.797
|
85.182
|
64.787
|
757.260
|
460.486
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.355
|
— | — |
0.291
|
— | — |
-0.594
|
— | — | — | — | — | — |
No JSON data available for plots.