Hg_chrom7_TN10mRNA_14449
Organism: Heterodera glycines Gene Locus: chr7:6728609-6732490 Feature type: polypeptideProtein Sequence
Length: 840
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.08 | 1.135 | 2.208 | 0.205 | 1.151 | 0.611 | 0.609 | 1.19 | 0.952 | 1.609 | 0.433 | 0.63 | 0.893 | 1.213 | 0.972 | 1.361 | 0.527 | 0.866 | 1.19 | 0.56 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13640
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.769
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
2-22
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.141
|
0.806
|
0.075
|
0.355
|
0.092
|
0.142
|
0.129
|
0.015
|
0.099
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002430
|
3.000
|
1.000
|
Hsc_gene_12526.t1
|
Hsc_gene_12526.t1;Hsc_gene_12527.t1;Hsc_gene_12531.t1
|
— |
P49419.5 Alpha-aminoadipic semialdehyde dehydrogenase [Homo sapiens]
|
KAI3413637.1 putative aldehyde dehydrogenase 7 member A1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004029|GO:0004672|GO:0005524|GO:0006468|GO:0016491
|
GO:0008150_0.894|GO:0005575_0.766|GO:0110165_0.766|GO:0009987_0.765|GO:0003674_0.743|GO:0065007_0.696|GO:0003824_0.689|GO:0050789_0.676|GO:0005622_0.646|GO:0016020_0.637|GO:0050896_0.633|GO:0016740_0.627|GO:0050794_0.627|GO:0140096_0.616|GO:0051716_0.545|GO:0016772_0.543|GO:0005737_0.538|GO:0016301_0.526|GO:0016773_0.517|GO:0004672_0.507
|
IPR000719+633-840_643-839_683-823+|IPR008271+745-757+|IPR011009+693-836+|IPR015590+68-199+|IPR016161+53-195+|IPR016162+33-200+|IPR044638+42-194+
|
SM00220+643-839+
|
PF00069+683-823+Protein_kinase_domain|PF00171+68-199+Aldehyde_dehydrogenase_family
|
— |
PTHR43521+42-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
240-641
|
2.000
|
1-239;642-840
|
6o4f_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.887
|
92243.600
|
4.019
|
-86.000
|
29.048
|
9.048
|
49.048
|
50.952
|
10.000
|
19.048
|
56.786
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
944.357
|
1713.802
|
1002.407
|
1221.724
|
1609.347
|
1537.595
|
1619.447
|
1168.747
|
294.659
|
208.169
|
245.236
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.002
|
-0.625
|
0.394
|
0.366
|
— | — |
-0.501
|
0.613
|
— | — |
3.057
|
— | — |
No JSON data available for plots.