Hg_chrom7_TN10mRNA_14451
Organism: Heterodera glycines Gene Locus: chr7:6734358-6736303 Feature type: polypeptideProtein Sequence
Length: 468
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.441 | 1.243 | 0.663 | 1.353 | 1.26 | 0.458 | 0.962 | 1.377 | 1.126 | 1.036 | 1.508 | 0.831 | 0.699 | 1.526 | 0.824 | 0.595 | 1.133 | 0.657 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13642
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.370
|
0.275
|
0.104
|
0.507
|
0.285
|
0.193
|
0.204
|
0.050
|
0.264
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000914
|
5.000
|
1.000
|
Hsc_gene_12521.t1
|
Hsc_gene_12519.t1;Hsc_gene_12521.t1
|
— |
P34574.1 Probable clathrin heavy chain 1 [Caenorhabditis elegans]
|
KAI3413640.1 Clathrin heavy chain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006886|GO:0016192
|
GO:0008150_0.871|GO:0005575_0.837|GO:0110165_0.833|GO:0009987_0.817|GO:0005622_0.803|GO:0005737_0.721|GO:0016020_0.701|GO:0043226_0.691|GO:0043229_0.668|GO:0051179_0.660|GO:0006810_0.649|GO:0051234_0.649|GO:0071840_0.638|GO:0016043_0.632|GO:0003674_0.581|GO:0043227_0.577|GO:0016192_0.562|GO:0043231_0.561|GO:0071944_0.547|GO:0006996_0.517
|
IPR000547+1-103_7-101_108-247_114-244+|IPR011990+3-191+|IPR016024+5-54_93-201+
|
SM00299+1-103_108-247+
|
PF00637+7-101_114-244+Region_in_Clathrin_and_VPS
|
— |
PTHR10292+4-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
428-468
|
1.000
|
1-427
|
6wcj_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
53565.970
|
6.759
|
1.500
|
31.197
|
8.547
|
51.709
|
48.291
|
16.239
|
14.957
|
47.009
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
purple
|
56.763
|
16.242
|
31.439
|
21.620
|
45.135
|
29.770
|
303.276
|
62.687
|
4.638
|
53.547
|
32.586
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
— |
-0.432
|
1.028
|
-0.585
|
3.361
|
0.969
|
2.419
|
— | — | — | — | — |
No JSON data available for plots.