SCN Proteipedia

Hg_chrom7_TN10mRNA_14454

Organism: Heterodera glycines Gene Locus: chr7:6740725-6747431 Feature type: polypeptide

Protein Sequence

Length: 1,681

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.913	1.3	0.952	0.574	1.309	1.403	0.474	1.011	1.282	1.535	0.892	1.085	1.256	0.664	1.02	0.85	0.751	1.064	0.686	1.19	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13645	—	—	1.222	2.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.847

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.285	0.116	0.025	0.439	0.255	0.383	0.385	0.030	0.264	0.082

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011529	1.000	1.000	Hsc_gene_12519.t1	Hsc_gene_12519.t1;Hsc_gene_12520.t1;Hsc_gene_12523.t1	—	P34574.1 Probable clathrin heavy chain 1 [Caenorhabditis elegans]	KAI3413640.1 Clathrin heavy chain [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005198\|GO:0005515\|GO:0006886\|GO:0016192\|GO:0030130\|GO:0030132\|GO:0032051\|GO:0071439	GO:0008150_0.889\|GO:0005575_0.866\|GO:0110165_0.861\|GO:0009987_0.843\|GO:0005622_0.788\|GO:0016020_0.739\|GO:0005737_0.728\|GO:0051179_0.726\|GO:0006810_0.715\|GO:0051234_0.715\|GO:0043226_0.690\|GO:0043229_0.653\|GO:0016043_0.652\|GO:0071840_0.652\|GO:0071944_0.646\|GO:0005886_0.601\|GO:0003674_0.596\|GO:0043227_0.592\|GO:0016192_0.574\|GO:0043231_0.556\|GO:0006996_0.526	IPR000547+541-683_541-687_545-682_690-832_692-830_837-976_843-974_983-1122_983-1128_1132-1273_1134-1271_1278-1424_1280-1422_1427-1570_1427-1586_1429-1566+\|IPR011990+710-895_1041-1185_1186-1526+\|IPR015348+331-354+\|IPR016024+332-488_446-783_810-892_891-1063_1041-1184_1186-1520+\|IPR016025+1-364_5-330+\|IPR016341+2-1668+\|IPR022365+19-55_198-233+	SM00299+541-683_690-832_837-976_983-1128_1132-1273_1278-1424_1427-1586+	PF00637+545-682_692-830_843-974_983-1122_1134-1271_1280-1422_1429-1566+Region_in_Clathrin_and_VPS\|PF01394+19-55_198-233+Clathrin_propeller_repeat\|PF09268+331-354+Clathrin,_heavy-chain_linker\|PF13838+356-422+Clathrin-H-link	G3DSA:1.25.40.10:FF:000001+1187-1526+Clathrin_heavy_chain\|G3DSA:1.25.40.10:FF:000002+1044-1186+Clathrin_heavy_chain\|G3DSA:1.25.40.10:FF:000005+892-1043+Clathrin_heavy_chain\|G3DSA:1.25.40.10:FF:000082+445-774+Clathrin_heavy_chain\|G3DSA:2.130.10.110:FF:000003+2-364+Clathrin_heavy_chain	PTHR10292+6-1627+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1681	6yai_H	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.578	191822.180	5.549	-20.000	25.996	11.481	47.591	52.409	12.909	13.087	45.330

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	6368.935	5197.836	7682.106	7348.415	10026.106	10691.414	9541.582	7210.622	6003.756	1724.492	3558.462

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.336	0.362	—	0.416	—	-0.155	-0.670	0.545	1.677	—	2.706	—	—

No JSON data available for plots.

Back to Browser