Hg_chrom7_TN10mRNA_14455
Organism: Heterodera glycines Gene Locus: chr7:6749940-6754079 Feature type: polypeptideProtein Sequence
Length: 874
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 1.597 | 0.832 | 1.184 | 0.953 | 1.115 | 0.708 | 1.316 | 0.966 | 1.191 | 0.676 | 1.01 | 1.398 | 0.704 | 1.097 | 1.765 | 0.825 | 0.763 | 1.056 | 0.74 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13646
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKKR
|
— | — |
47-98
|
0.991
|
— | — |
0.000
|
— | — |
0.234
|
0.204
|
0.010
|
0.680
|
0.265
|
0.428
|
0.275
|
0.034
|
0.331
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011530
|
1.000
|
1.000
|
Hsc_gene_12518.t1
|
Hsc_gene_12518.t1
|
— |
Q13615.3 Myotubularin-related protein 3 [Homo sapiens]
|
KAI1721375.1 myotubularin-like phosphatase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016311
|
GO:0008150_0.916|GO:0005575_0.889|GO:0110165_0.887|GO:0009987_0.867|GO:0003674_0.836|GO:0005622_0.807|GO:0065007_0.717|GO:0050789_0.712|GO:0050794_0.692|GO:0005737_0.678|GO:0008152_0.604|GO:0003824_0.602|GO:0044237_0.584|GO:0016020_0.579|GO:0044238_0.563|GO:0016787_0.558|GO:0016788_0.504
|
IPR010569+219-605_224-541+|IPR016130+431-441+|IPR029021+221-606+|IPR030564+86-673+
|
— |
PF06602+224-541+Myotubularin-like_phosphatase_domain
|
— |
PTHR10807+86-673+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25;621-685;725-773;873-874
|
3.000
|
26-620;686-724;774-872
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
97144.950
|
7.035
|
7.500
|
22.769
|
11.556
|
51.373
|
48.627
|
12.471
|
10.297
|
53.661
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1765.410
|
3820.259
|
1545.553
|
1199.829
|
1668.031
|
1907.094
|
4588.924
|
1358.428
|
1368.716
|
664.088
|
966.072
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.534
|
-1.808
|
-0.258
|
0.444
|
0.207
|
1.277
|
-0.592
|
1.898
|
— | — | — | — | — |
No JSON data available for plots.