Hg_chrom7_TN10mRNA_14456
Organism: Heterodera glycines Gene Locus: chr7:6754524-6757035 Feature type: polypeptideProtein Sequence
Length: 407
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.029 | 0.971 | 1.027 | 0.424 | 1.229 | 1.134 | 0.819 | 1.843 | 1.256 | 1.162 | 0.707 | 0.723 | 1.502 | 0.614 | 1.203 | 1.088 | 0.524 | 1.154 | 0.945 | 1.012 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13647
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.441
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.291
|
0.569
|
0.068
|
0.709
|
0.322
|
0.349
|
0.175
|
0.495
|
0.111
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011531
|
1.000
|
1.000
|
Hsc_gene_12517.t1
|
Hsc_gene_12517.t1
|
— |
Q22633.1 4-hydroxyphenylpyruvate dioxygenase [Caenorhabditis elegans]
|
KAI3409902.1 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003868|GO:0009072|GO:0016701
|
GO:0005575_0.635|GO:0110165_0.635|GO:0008150_0.633|GO:0003674_0.626|GO:0005622_0.588|GO:0005737_0.569|GO:0016020_0.556|GO:0043226_0.540|GO:0009987_0.526|GO:0005488_0.525|GO:0008152_0.515
|
IPR004360+199-309+|IPR005956+9-390_19-388_23-389+|IPR029068+6-173_18-376_182-391+|IPR037523+22-153_187-346+|IPR041735+185-380+|IPR041736+23-164+
|
— |
PF00903+199-309+Glyoxalase/Bleomycin_resistance_protein/Dioxygenase_superfamily
|
G3DSA:3.10.180.10:FF:000001+183-389+4-hydroxyphenylpyruvate_dioxygenase
|
PTHR11959+19-388+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-407
|
8xtv_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
45719.590
|
6.231
|
-2.500
|
27.273
|
13.759
|
46.683
|
53.317
|
14.251
|
13.022
|
48.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
2970.099
|
1127.636
|
2312.982
|
3005.603
|
4347.177
|
1031.958
|
2546.642
|
13153.902
|
577.763
|
2238.649
|
1526.841
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.809
|
1.277
|
0.485
|
0.501
|
-2.060
|
1.314
|
3.569
|
-2.226
|
-2.096
|
2.555
|
— | — |
3.231
|
No JSON data available for plots.