Hg_chrom7_TN10mRNA_14457
Organism: Heterodera glycines Gene Locus: chr7:6757075-6760332 Feature type: polypeptideProtein Sequence
Length: 457
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.941 | 1.12 | 0.517 | 0.679 | 0.766 | 0.842 | 0.443 | 1.094 | 1.021 | 2.07 | 0.332 | 1.416 | 1.823 | 1.22 | 1.34 | 1.219 | 0.574 | 1.194 | 1.347 | 0.837 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13648
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.902
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
mitochondria
|
— |
44-68
|
0.943
|
— | — | — |
0.824
|
0.468
|
4.000
|
— |
0.143
|
0.115
|
0.022
|
0.193
|
0.213
|
0.106
|
0.096
|
0.055
|
0.709
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011532
|
1.000
|
1.000
|
Hsc_gene_12516.t1
|
Hsc_gene_12516.t1
|
— |
O76554.1 Acetylcholine receptor subunit alpha-type des-2 [Caenorhabditis elegans]
|
KAI1729194.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0005575_0.920|GO:0110165_0.920|GO:0008150_0.867|GO:0016020_0.863|GO:0005886_0.772|GO:0071944_0.772|GO:0009987_0.749|GO:0065007_0.694|GO:0003674_0.677|GO:0051179_0.645|GO:0006810_0.635|GO:0051234_0.635|GO:0050789_0.627|GO:0050896_0.617|GO:0050794_0.571|GO:0032501_0.569|GO:0006811_0.540|GO:0055085_0.535|GO:0034220_0.508
|
IPR006201+66-368+|IPR006202+59-206+|IPR036734+48-291_57-251+
|
— |
PF02931+59-206+Neurotransmitter-gated_ion-channel_ligand_binding_domain
|
— |
PTHR18945+66-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-457
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
51690.470
|
8.549
|
11.000
|
18.381
|
13.348
|
38.512
|
61.488
|
10.941
|
7.440
|
47.702
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
312.476
|
979.480
|
932.860
|
167.825
|
198.697
|
521.739
|
296.252
|
451.311
|
14.106
|
25.943
|
20.870
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.300
|
-2.682
|
-2.365
|
— |
1.409
|
-0.807
|
-0.313
|
-0.466
|
— | — | — | — | — |