Hg_chrom7_TN10mRNA_14462
Organism: Heterodera glycines Gene Locus: chr7:6775365-6778551 Feature type: polypeptideProtein Sequence
Length: 723
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.788 | 1.029 | 0.754 | 0.525 | 0.83 | 1.241 | 0.494 | 1.176 | 1.076 | 1.72 | 0.859 | 1.871 | 2.152 | 0.718 | 1.129 | 0.85 | 0.884 | 0.943 | 2.021 | 0.936 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13653
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.953
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKQKKAARDKKQILKKNRI,RVKKQKKAARDKKQILKKNR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.083
|
0.264
|
0.027
|
0.186
|
0.436
|
0.450
|
0.514
|
0.008
|
0.588
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011536
|
1.000
|
1.000
|
Hsc_gene_12511.t1
|
Hsc_gene_12511.t1
|
— |
Q9UBH6.1 Solute carrier family 53 member 1 [Homo sapiens]
|
KAI1729169.1 EXS family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.924|GO:0009987_0.735|GO:0005575_0.727|GO:0110165_0.727|GO:0016020_0.703|GO:0003674_0.653|GO:0051179_0.628|GO:0051234_0.619|GO:0006810_0.617|GO:0005886_0.608|GO:0071944_0.608|GO:0005622_0.510
|
IPR004331+1-32_1-180_122-169+|IPR004342+272-637_459-664+
|
— |
PF03105+1-32_122-169+SPX_domain|PF03124+272-637+EXS_family
|
— |
PTHR10783+1-651+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
718-723
|
1.000
|
1-717
|
8x5e_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
84109.950
|
9.310
|
23.500
|
22.683
|
15.906
|
43.292
|
56.708
|
13.555
|
9.129
|
42.324
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
1162.981
|
1564.931
|
1713.060
|
1424.542
|
1166.951
|
1109.365
|
1161.999
|
1195.594
|
786.221
|
997.211
|
906.786
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.273
|
-0.157
|
-0.320
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.